no code implementations • 18 Mar 2022 • Rohan P. Joshi, Bolesław L. Osinski, Niha Beig, Lingdao Sha, Kshitij Ingale, Martin C. Stumpe
The association of individual cell features with MET alterations suggested a predictive model could distinguish MET wild-type from MET amplification or MET exon 14 deletion.
no code implementations • 12 Mar 2021 • Marwa Ismail, Prateek Prasanna, Kaustav Bera, Volodymyr Statsevych, Virginia Hill, Gagandeep Singh, Sasan Partovi, Niha Beig, Sean McGarry, Peter Laviolette, Manmeet Ahluwalia, Anant Madabhushi, Pallavi Tiwari
Our work is based on the rationale that highly aggressive tumors tend to grow uncontrollably, leading to pronounced biomechanical tissue deformations in the normal parenchyma, which when combined with local morphological differences in the tumor confines on MRI scans, will comprehensively capture tumor field effect.
no code implementations • 17 Jun 2020 • Marwa Ismail, Ramon Correa, Kaustav Bera, Ruchika Verma, Anas Saeed Bamashmos, Niha Beig, Jacob Antunes, Prateek Prasanna, Volodymyr Statsevych, Manmeet Ahluwalia, Pallavi Tiwari
We evaluate the efficacy of SpACe maps on MRI scans with co-localized ground truth obtained from corresponding biopsy, to predict the mutation status of 2 driver genes in Glioblastoma: (1) EGFR (n=91), and (2) MGMT (n=81).
1 code implementation • 10 Apr 2020 • Amir Reza Sadri, Andrew Janowczyk, Ren Zou, Ruchika Verma, Niha Beig, Jacob Antunes, Anant Madabhushi, Pallavi Tiwari, Satish E. Viswanath
We present MRQy, a new open-source quality control tool to (a) interrogate MRI cohorts for site- or equipment-based differences, and (b) quantify the impact of MRI artifacts on relative image quality; to help determine how to correct for these variations prior to model development.