Search Results for author: Olivier Gevaert

Found 17 papers, 2 papers with code

Towards a more inductive world for drug repurposing approaches

1 code implementation21 Nov 2023 Jesus de la Fuente, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Laura Vera, Marija Pizurica, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert, Mikel Hernaez

In this work, we first perform an in-depth evaluation of current DTI datasets and prediction models through a robust benchmarking process, and show that DTI prediction methods based on transductive models lack generalization and lead to inflated performance when evaluated as previously done in the literature, hence not being suited for drug repurposing approaches.

Benchmarking

Multimodal Machine Learning in Image-Based and Clinical Biomedicine: Survey and Prospects

no code implementations4 Nov 2023 Elisa Warner, Joonsang Lee, William Hsu, Tanveer Syeda-Mahmood, Charles Kahn, Olivier Gevaert, Arvind Rao

Machine learning (ML) applications in medical artificial intelligence (AI) systems have shifted from traditional and statistical methods to increasing application of deep learning models.

Data Integration Translation

Foundation Metrics for Evaluating Effectiveness of Healthcare Conversations Powered by Generative AI

no code implementations21 Sep 2023 Mahyar Abbasian, Elahe Khatibi, Iman Azimi, David Oniani, Zahra Shakeri Hossein Abad, Alexander Thieme, Ram Sriram, Zhongqi Yang, Yanshan Wang, Bryant Lin, Olivier Gevaert, Li-Jia Li, Ramesh Jain, Amir M. Rahmani

The purpose of this paper is to explore state-of-the-art LLM-based evaluation metrics that are specifically applicable to the assessment of interactive conversational models in healthcare.

Ethics

Reliability-based cleaning of noisy training labels with inductive conformal prediction in multi-modal biomedical data mining

1 code implementation13 Sep 2023 Xianghao Zhan, Qinmei Xu, Yuanning Zheng, Guangming Lu, Olivier Gevaert

This method capitalizes on a small set of accurately labeled training data and leverages ICP-calculated reliability metrics to rectify mislabeled data and outliers within vast quantities of noisy training data.

Conformal Prediction

Disparities in Dermatology AI Performance on a Diverse, Curated Clinical Image Set

no code implementations15 Mar 2022 Roxana Daneshjou, Kailas Vodrahalli, Roberto A Novoa, Melissa Jenkins, Weixin Liang, Veronica Rotemberg, Justin Ko, Susan M Swetter, Elizabeth E Bailey, Olivier Gevaert, Pritam Mukherjee, Michelle Phung, Kiana Yekrang, Bradley Fong, Rachna Sahasrabudhe, Johan A. C. Allerup, Utako Okata-Karigane, James Zou, Albert Chiou

To ascertain potential biases in algorithm performance in this context, we curated the Diverse Dermatology Images (DDI) dataset-the first publicly available, expertly curated, and pathologically confirmed image dataset with diverse skin tones.

Data-driven decomposition of brain dynamics with principal component analysis in different types of head impacts

no code implementations27 Oct 2021 Xianghao Zhan, Yuzhe Liu, Nicholas J. Cecchi, Olivier Gevaert, Michael M. Zeineh, Gerald A. Grant, David B. Camarillo

The brain dynamics decomposition enables better interpretation of the patterns in brain injury metrics and the sensitivity of brain injury metrics across impact types.

Rapidly and accurately estimating brain strain and strain rate across head impact types with transfer learning and data fusion

no code implementations31 Aug 2021 Xianghao Zhan, Yuzhe Liu, Nicholas J. Cecchi, Olivier Gevaert, Michael M. Zeineh, Gerald A. Grant, David B. Camarillo

To address the computational cost of FEM, the limited strain rate prediction, and the generalizability of MLHMs to on-field datasets, we propose data fusion and transfer learning to develop a series of MLHMs to predict the maximum principal strain (MPS) and maximum principal strain rate (MPSR).

Transfer Learning

Kinematics clustering enables head impact subtyping for better traumatic brain injury prediction

no code implementations7 Aug 2021 Xianghao Zhan, Yiheng Li, Yuzhe Liu, Nicholas J. Cecchi, Olivier Gevaert, Michael M. Zeineh, Gerald A. Grant, David B. Camarillo

However, due to different kinematic characteristics, many brain injury risk estimation models are not generalizable across the variety of impacts that humans may sustain.

Car Racing Clustering +2

Predictive Factors of Kinematics in Traumatic Brain Injury from Head Impacts Based on Statistical Interpretation

no code implementations9 Feb 2021 Xianghao Zhan, Yiheng Li, Yuzhe Liu, August G. Domel, Hossein Vahid Alizadeh, Zhou Zhou, Nicholas J. Cecchi, Samuel J. Raymond, Stephen Tiernan, Jesse Ruan, Saeed Barbat, Olivier Gevaert, Michael M. Zeineh, Gerald A. Grant, David B. Camarillo

To better design brain injury criteria, the predictive power of rotational kinematics factors, which are different in 1) the derivative order (angular velocity, angular acceleration, angular jerk), 2) the direction and 3) the power (e. g., square-rooted, squared, cubic) of the angular velocity, were analyzed based on different datasets including laboratory impacts, American football, mixed martial arts (MMA), NHTSA automobile crashworthiness tests and NASCAR crash events.

Relationship between brain injury criteria and brain strain across different types of head impacts can be different

no code implementations18 Dec 2020 Xianghao Zhan, Yiheng Li, Yuzhe Liu, August G. Domel, Hossein Vahid Alizadeh, Samuel J. Raymond, Jesse Ruan, Saeed Barbat, Stephen Tiernan, Olivier Gevaert, Michael Zeineh, Gerald Grant, David B. Camarillo

The results show a significant difference in the relationship between BIC and brain strain across datasets, indicating the same BIC value may suggest different brain strain in different head impact types.

regression

Deep Learning Head Model for Real-time Estimation of Entire Brain Deformation in Concussion

no code implementations16 Oct 2020 Xianghao Zhan, Yuzhe Liu, Samuel J. Raymond, Hossein Vahid Alizadeh, August G. Domel, Olivier Gevaert, Michael Zeineh, Gerald Grant, David B. Camarillo

Results: The proposed deep learning head model can calculate the maximum principal strain for every element in the entire brain in less than 0. 001s (with an average root mean squared error of 0. 025, and with a standard deviation of 0. 002 over twenty repeats with random data partition and model initialization).

Feature Engineering

3-D Convolutional Neural Networks for Glioblastoma Segmentation

no code implementations14 Nov 2016 Darvin Yi, Mu Zhou, Zhao Chen, Olivier Gevaert

In this paper, we propose a framework of 3-D fully CNN models for Glioblastoma segmentation from multi-modality MRI data.

Segmentation

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