Search Results for author: Pengyu Hong

Found 22 papers, 4 papers with code

Solvent-Aware 2D NMR Prediction: Leveraging Multi-Tasking Training and Iterative Self-Training Strategies

no code implementations17 Mar 2024 Yunrui Li, Hao Xu, Pengyu Hong

Although significant progresses have been made in predicting one-dimensional (1D) NMR, two-dimensional (2D) NMR prediction via ML remains a challenge due to the lack of annotated NMR training datasets.

Graph Multi-Similarity Learning for Molecular Property Prediction

no code implementations31 Jan 2024 Hao Xu, Zhengyang Zhou, Pengyu Hong

Additionally, previous multi-similarity approaches require the specification of positive and negative pairs to attribute distinct predefined weights to different relative similarities, which can introduce potential bias.

Attribute Contrastive Learning +5

GlycoNMR: Dataset and benchmarks for NMR chemical shift prediction of carbohydrates with graph neural networks

no code implementations28 Nov 2023 Zizhang Chen, Ryan Paul Badman, Lachele Foley, Robert Woods, Pengyu Hong

This under-exploration can be primarily attributed to the limited availability of comprehensive and well-curated carbohydrate-specific datasets and a lack of Machine learning (ML) pipelines specifically tailored to meet the unique problems presented by carbohydrate data.

molecular representation Property Prediction +1

Molecular Identification and Peak Assignment: Leveraging Multi-Level Multimodal Alignment on NMR

no code implementations23 Nov 2023 Hao Xu, Zhengyang Zhou, Pengyu Hong

Nuclear magnetic resonance (NMR) spectroscopy plays an essential role in deciphering molecular structure and dynamic behaviors.

Contrastive Learning Meta-Learning +1

Asymmetric Contrastive Multimodal Learning for Advancing Chemical Understanding

no code implementations11 Nov 2023 Hao Xu, Yifei Wang, Yunrui Li, Pengyu Hong

Through practical tasks such as isomer discrimination and uncovering crucial chemical properties for drug discovery, ACML exhibits its capability to revolutionize chemical research and applications, providing a deeper understanding of chemical semantics of different modalities.

Contrastive Learning Drug Discovery +2

Counterpart Fairness -- Addressing Systematic between-group Differences in Fairness Evaluation

1 code implementation29 May 2023 Yifei Wang, Zhengyang Zhou, Liqin Wang, John Laurentiev, Peter Hou, Li Zhou, Pengyu Hong

The confounding factors, which are non-sensitive variables but manifest systematic differences, can significantly affect fairness evaluation.

Decision Making Fairness

Characterizing the Influence of Graph Elements

no code implementations14 Oct 2022 Zizhang Chen, Peizhao Li, Hongfu Liu, Pengyu Hong

To fill this gap, we started with the simple graph convolution (SGC) model that operates on an attributed graph and formulated an influence function to approximate the changes in model parameters when a node or an edge is removed from an attributed graph.

Motif-based Graph Representation Learning with Application to Chemical Molecules

1 code implementation9 Aug 2022 Yifei Wang, Shiyang Chen, Guobin Chen, Ethan Shurberg, Hang Liu, Pengyu Hong

MCM builds a motif vocabulary in an unsupervised way and deploys a novel motif convolution operation to extract the local structural context of individual nodes, which is then used to learn higher-level node representations via multilayer perceptron and/or message passing in graph neural networks.

Graph Learning Graph Representation Learning

Knowledgebra: An Algebraic Learning Framework for Knowledge Graph

no code implementations15 Apr 2022 Tong Yang, Yifei Wang, Long Sha, Jan Engelbrecht, Pengyu Hong

As far as we know, by applying abstract algebra in statistical learning, this work develops the first formal language for general knowledge graphs, and also sheds light on the problem of neural-symbolic integration from an algebraic perspective.

Abstract Algebra General Knowledge +3

Graph-Graph Similarity Network

no code implementations1 Jan 2021 Han Yue, Pengyu Hong, Hongfu Liu

In this paper, we propose a Graph-Graph Similarity Network to tackle the graph classification problem by constructing a SuperGraph through learning the relationships among graphs.

General Classification Graph Classification +2

Variance Regularization for Accelerating Stochastic Optimization

no code implementations13 Aug 2020 Tong Yang, Long Sha, Pengyu Hong

While nowadays most gradient-based optimization methods focus on exploring the high-dimensional geometric features, the random error accumulated in a stochastic version of any algorithm implementation has not been stressed yet.

Stochastic Optimization

A Deep Learning Approach for COVID-19 Trend Prediction

no code implementations9 Aug 2020 Tong Yang, Long Sha, Justin Li, Pengyu Hong

In this work, we developed a deep learning model-based approach to forecast the spreading trend of SARS-CoV-2 in the United States.

Time Series Time Series Analysis

NagE: Non-Abelian Group Embedding for Knowledge Graphs

no code implementations22 May 2020 Tong Yang, Long Sha, Pengyu Hong

We demonstrated the existence of a group algebraic structure hidden in relational knowledge embedding problems, which suggests that a group-based embedding framework is essential for designing embedding models.

Knowledge Graph Embedding Knowledge Graphs

Probabilistic Connection Importance Inference and Lossless Compression of Deep Neural Networks

no code implementations ICLR 2020 Xin Xing, Long Sha, Pengyu Hong, Zuofeng Shang, Jun S. Liu

Deep neural networks (DNNs) can be huge in size, requiring a considerable a mount of energy and computational resources to operate, which limits their applications in numerous scenarios.

A Group-Theoretic Framework for Knowledge Graph Embedding

no code implementations25 Sep 2019 Tong Yang, Long Sha, Pengyu Hong

We have rigorously proved the existence of a group algebraic structure hidden in relational knowledge embedding problems, which suggests that a group-based embedding framework is essential for model design.

Knowledge Graph Embedding

Detecting Topological Defects in 2D Active Nematics Using Convolutional Neural Networks

no code implementations ICLR 2019 Ruoshi Liu, Michael M. Norton, Seth Fraden, Pengyu Hong

Active matter consists of active agents which transform energy extracted from surroundings into momentum, producing a variety of collective phenomena.

Defect Detection

Context Dependent Modulation of Activation Function

no code implementations ICLR 2019 Long Sha, Jonathan Schwarcz, Pengyu Hong

This modification produces statistically significant improvements in comparison with traditional ANN nodes in the context of Convolutional Neural Networks and Long Short-Term Memory networks.

Robust Detection of Adversarial Attacks by Modeling the Intrinsic Properties of Deep Neural Networks

no code implementations NeurIPS 2018 Zhi-Hao Zheng, Pengyu Hong

Our approach tries to capture the intrinsic properties of a DNN classifier and uses them to detect adversarial inputs.

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