Search Results for author: Pratik Dutta

Found 3 papers, 2 papers with code

DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

4 code implementations26 Jun 2023 Zhihan Zhou, Yanrong Ji, Weijian Li, Pratik Dutta, Ramana Davuluri, Han Liu

Decoding the linguistic intricacies of the genome is a crucial problem in biology, and pre-trained foundational models such as DNABERT and Nucleotide Transformer have made significant strides in this area.

Computational Efficiency Core Promoter Detection +9

Multimodal Graph-based Transformer Framework for Biomedical Relation Extraction

1 code implementation Findings (ACL) 2021 Sriram Pingali, Shweta Yadav, Pratik Dutta, Sriparna Saha

The recent advancement of pre-trained Transformer models has propelled the development of effective text mining models across various biomedical tasks.

Relation Relation Extraction +1

Amalgamation of protein sequence, structure and textual information for improving protein-protein interaction identification

no code implementations ACL 2020 Pratik Dutta, Sriparna Saha

As a first step towards enabling the development of multimodal approaches for PPI identification, we have developed two multi-modal datasets which are extensions and multi-modal versions of two popular benchmark PPI corpora (BioInfer and HRPD50).

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