Search Results for author: Raul Rabadan

Found 5 papers, 3 papers with code

Topological data analysis identifies emerging adaptive mutations in SARS-CoV-2

no code implementations14 Jun 2021 Michael Bleher, Lukas Hahn, Maximilian Neumann, Juan Angel Patino-Galindo, Mathieu Carriere, Ulrich Bauer, Raul Rabadan, Andreas Ott

By leveraging the stratification by time in sequence data, our method enables the high-resolution longitudinal analysis of topological signals of adaptation.

Topological Data Analysis

Dose-response modeling in high-throughput cancer drug screenings: An end-to-end approach

1 code implementation13 Dec 2018 Wesley Tansey, Kathy Li, Haoran Zhang, Scott W. Linderman, Raul Rabadan, David M. Blei, Chris H. Wiggins

Personalized cancer treatments based on the molecular profile of a patient's tumor are an emerging and exciting class of treatments in oncology.

Applications

The Holdout Randomization Test for Feature Selection in Black Box Models

3 code implementations1 Nov 2018 Wesley Tansey, Victor Veitch, Haoran Zhang, Raul Rabadan, David M. Blei

We propose the holdout randomization test (HRT), an approach to feature selection using black box predictive models.

Methodology

Black Box FDR

no code implementations ICML 2018 Wesley Tansey, Yixin Wang, David M. Blei, Raul Rabadan

BB-FDR learns a series of black box predictive models to boost power and control the false discovery rate (FDR) at two stages of study analysis.

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