Search Results for author: Richard G. Abramson

Found 12 papers, 5 papers with code

UNesT: Local Spatial Representation Learning with Hierarchical Transformer for Efficient Medical Segmentation

1 code implementation28 Sep 2022 Xin Yu, Qi Yang, Yinchi Zhou, Leon Y. Cai, Riqiang Gao, Ho Hin Lee, Thomas Li, Shunxing Bao, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Zizhao Zhang, Yuankai Huo, Bennett A. Landman, Yucheng Tang

Transformer-based models, capable of learning better global dependencies, have recently demonstrated exceptional representation learning capabilities in computer vision and medical image analysis.

Brain Segmentation Image Segmentation +3

Characterizing Renal Structures with 3D Block Aggregate Transformers

no code implementations4 Mar 2022 Xin Yu, Yucheng Tang, Yinchi Zhou, Riqiang Gao, Qi Yang, Ho Hin Lee, Thomas Li, Shunxing Bao, Yuankai Huo, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Bennett A. Landman

Efficiently quantifying renal structures can provide distinct spatial context and facilitate biomarker discovery for kidney morphology.

RAP-Net: Coarse-to-Fine Multi-Organ Segmentation with Single Random Anatomical Prior

1 code implementation23 Dec 2020 Ho Hin Lee, Yucheng Tang, Shunxing Bao, Richard G. Abramson, Yuankai Huo, Bennett A. Landman

We combine the anatomical prior with corresponding extracted patches to preserve the anatomical locations and boundary information for performing high-resolution segmentation across all organs in a single model.

Organ Segmentation Segmentation

Outlier Guided Optimization of Abdominal Segmentation

no code implementations10 Feb 2020 Yuchen Xu, Olivia Tang, Yucheng Tang, Ho Hin Lee, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman

We built on a pre-trained 3D U-Net model for abdominal multi-organ segmentation and augmented the dataset either with outlier data (e. g., exemplars for which the baseline algorithm failed) or inliers (e. g., exemplars for which the baseline algorithm worked).

Active Learning Computed Tomography (CT) +2

Contrast Phase Classification with a Generative Adversarial Network

no code implementations14 Nov 2019 Yucheng Tang, Ho Hin Lee, Yuchen Xu, Olivia Tang, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Camilo Bermudez, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman

Dynamic contrast enhanced computed tomography (CT) is an imaging technique that provides critical information on the relationship of vascular structure and dynamics in the context of underlying anatomy.

Anatomy Classification +4

Semi-Supervised Multi-Organ Segmentation through Quality Assurance Supervision

no code implementations12 Nov 2019 Ho Hin Lee, Yucheng Tang, Olivia Tang, Yuchen Xu, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman

The contributions of the proposed method are threefold: We show that (1) the QA scores can be used as a loss function to perform semi-supervised learning for unlabeled data, (2) the well trained discriminator is learnt by QA score rather than traditional true/false, and (3) the performance of multi-organ segmentation on unlabeled datasets can be fine-tuned with more robust and higher accuracy than the original baseline method.

Image Segmentation Medical Image Segmentation +3

Splenomegaly Segmentation on Multi-modal MRI using Deep Convolutional Networks

no code implementations9 Nov 2018 Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Hyeonsoo Moon, Prasanna Parvathaneni, Tamara K. Moyo, Michael R. Savona, Albert Assad, Richard G. Abramson, Bennett A. Landman

A clinically acquired cohort containing both T1-weighted (T1w) and T2-weighted (T2w) MRI splenomegaly scans was used to train and evaluate the performance of multi-atlas segmentation (MAS), 2D DCNN networks, and a 3D DCNN network.

Segmentation Splenomegaly Segmentation On Multi-Modal Mri

SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth

1 code implementation15 Oct 2018 Yuankai Huo, Zhoubing Xu, Hyeonsoo Moon, Shunxing Bao, Albert Assad, Tamara K. Moyo, Michael R. Savona, Richard G. Abramson, Bennett A. Landman

SynSeg-Net is trained by using (1) unpaired intensity images from source and target modalities, and (2) manual labels only from source modality.

Image Segmentation Segmentation +1

Adversarial Synthesis Learning Enables Segmentation Without Target Modality Ground Truth

1 code implementation20 Dec 2017 Yuankai Huo, Zhoubing Xu, Shunxing Bao, Albert Assad, Richard G. Abramson, Bennett A. Landman

Herein, we proposed a novel end-to-end synthesis and segmentation network (EssNet) to achieve the unpaired MRI to CT image synthesis and CT splenomegaly segmentation simultaneously without using manual labels on CT.

Image-to-Image Translation Medical Image Segmentation +2

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