Search Results for author:
Found 26 papers, 8 papers with code
Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization
We further evaluate our method's capability to harmonize longitudinal positional variation on 1033 subjects from the Baltimore Longitudinal Study of Aging (BLSA) dataset, which contains longitudinal single abdominal slices, and confirmed that our method can harmonize the slice positional variance in terms of visceral fat area.
COSST: Multi-organ Segmentation with Partially Labeled Datasets Using Comprehensive Supervisions and Self-training
We revisit the problem from a perspective of partial label supervision signals and identify two signals derived from ground truth and one from pseudo labels.
Longitudinal Multimodal Transformer Integrating Imaging and Latent Clinical Signatures From Routine EHRs for Pulmonary Nodule Classification
In this work, we propose a transformer-based multimodal strategy to integrate repeat imaging with longitudinal clinical signatures from routinely collected EHRs for SPN classification.
Flexible-Cm GAN: Towards Precise 3D Dose Prediction in Radiotherapy
Deep learning has been utilized in knowledge-based radiotherapy planning in which a system trained with a set of clinically approved plans is employed to infer a three-dimensional dose map for a given new patient.
Reducing Positional Variance in Cross-sectional Abdominal CT Slices with Deep Conditional Generative Models
External experiments on 20 subjects from the Baltimore Longitudinal Study of Aging (BLSA) dataset that contains longitudinal single abdominal slices validate that our method can harmonize the slice positional variance in terms of muscle and visceral fat area.
UNesT: Local Spatial Representation Learning with Hierarchical Transformer for Efficient Medical Segmentation
Transformer-based models, capable of learning better global dependencies, have recently demonstrated exceptional representation learning capabilities in computer vision and medical image analysis.
Longitudinal Variability Analysis on Low-dose Abdominal CT with Deep Learning-based Segmentation
Metabolic health is increasingly implicated as a risk factor across conditions from cardiology to neurology, and efficiency assessment of body composition is critical to quantitatively characterizing these relationships.
Time-distance vision transformers in lung cancer diagnosis from longitudinal computed tomography
In cross-validation on screening chest CTs from the NLST, our methods (0. 785 and 0. 786 AUC respectively) significantly outperform a cross-sectional approach (0. 734 AUC) and match the discriminative performance of the leading longitudinal medical imaging algorithm (0. 779 AUC) on benign versus malignant classification.
Body Composition Assessment with Limited Field-of-view Computed Tomography: A Semantic Image Extension Perspective
We evaluate the validity of the proposed method in automatic BC assessment using lung screening CT with limited FOV.
A Comparative Study of Confidence Calibration in Deep Learning: From Computer Vision to Medical Imaging
We believe that this study has merits to guide readers to choose calibration models and understand gaps between general computer vision and medical imaging domains.
Pseudo-Label Guided Multi-Contrast Generalization for Non-Contrast Organ-Aware Segmentation
In this paper, we propose a novel unsupervised approach that leverages pairwise contrast-enhanced CT (CECT) context to compute non-contrast segmentation without ground-truth label.
Characterizing Renal Structures with 3D Block Aggregate Transformers
Efficiently quantifying renal structures can provide distinct spatial context and facilitate biomarker discovery for kidney morphology.
You May Need both Good-GAN and Bad-GAN for Anomaly Detection
A Bad-GAN generates pseudo anomalies at the low-density area of inlier distribution, and thus the inlier/outlier distinction can be approximated.
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
Our contribution is three-fold: (1) a single deep network framework is proposed to tackle missing stain in MxIF; (2) the proposed 'N-to-N' strategy reduces theoretical four years of computational time to 20 hours when covering all possible missing stains scenarios, with up to five missing stains (e. g., '(N-1)-to-1', '(N-2)-to-2'); and (3) this work is the first comprehensive experimental study of investigating cross-stain synthesis in MxIF.
Technical Report: Quality Assessment Tool for Machine Learning with Clinical CT
Image Quality Assessment (IQA) is important for scientific inquiry, especially in medical imaging and machine learning.
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
To our knowledge, it is the first generative adversarial model that addresses multi-modal missing imputation by modeling the joint distribution of image and non-image data.
Development and Characterization of a Chest CT Atlas
For the entire study cohort, the optimized pipeline achieves a registration success rate of 91. 7%.
Deep Multi-path Network Integrating Incomplete Biomarker and Chest CT Data for Evaluating Lung Cancer Risk
The network can be trained end-to-end with both medical image features and CDEs/biomarkers, or make a prediction with single modality.
Outlier Guided Optimization of Abdominal Segmentation
We built on a pre-trained 3D U-Net model for abdominal multi-organ segmentation and augmented the dataset either with outlier data (e. g., exemplars for which the baseline algorithm failed) or inliers (e. g., exemplars for which the baseline algorithm worked).
Validation and Optimization of Multi-Organ Segmentation on Clinical Imaging Archives
A 2015 MICCAI challenge spurred substantial innovation in multi-organ abdominal CT segmentation with both traditional and deep learning methods.
Internal-transfer Weighting of Multi-task Learning for Lung Cancer Detection
To improve performance on the primary task, we propose an Internal-Transfer Weighting (ITW) strategy to suppress the loss functions on auxiliary tasks for the final stages of training.
Contrast Phase Classification with a Generative Adversarial Network
Dynamic contrast enhanced computed tomography (CT) is an imaging technique that provides critical information on the relationship of vascular structure and dynamics in the context of underlying anatomy.
Deep Multi-task Prediction of Lung Cancer and Cancer-free Progression from Censored Heterogenous Clinical Imaging
Annual low dose computed tomography (CT) lung screening is currently advised for individuals at high risk of lung cancer (e. g., heavy smokers between 55 and 80 years old).
Semi-Supervised Multi-Organ Segmentation through Quality Assurance Supervision
The contributions of the proposed method are threefold: We show that (1) the QA scores can be used as a loss function to perform semi-supervised learning for unlabeled data, (2) the well trained discriminator is learnt by QA score rather than traditional true/false, and (3) the performance of multi-organ segmentation on unlabeled datasets can be fine-tuned with more robust and higher accuracy than the original baseline method.
Distanced LSTM: Time-Distanced Gates in Long Short-Term Memory Models for Lung Cancer Detection
To model both regular and irregular longitudinal samples, we generalize the LSTM model with the Distanced LSTM (DLSTM) for temporally varied acquisitions.
Lung Cancer Detection using Co-learning from Chest CT Images and Clinical Demographics
The results show that the AUC obtained from clinical demographics alone was 0. 635 while the attention network alone reached an accuracy of 0. 687.
