no code implementations • 17 Nov 2023 • Mohamed El Amine Elforaici, Emmanuel Montagnon, Francisco Perdigon Romero, William Trung Le, Feryel Azzi, Dominique Trudel, Bich Nguyen, Simon Turcotte, An Tang, Samuel Kadoury
We use an attention-based approach that weighs the importance of different slide regions in producing the final classification results.
no code implementations • 17 Sep 2023 • Malo de Boisredon, Eugene Vorontsov, William Trung Le, Samuel Kadoury
An image-to-image translation strategy between imaging modalities is used to produce annotated pseudo-target volumes and improve generalization to the unannotated target modality.
no code implementations • 13 Mar 2023 • Matej Gazda, Peter Drotar, Liset Vazquez Romaguera, Samuel Kadoury
Intensity modulated radiotherapy (IMRT) is one of the most common modalities for treating cancer patients.
no code implementations • 7 Mar 2023 • William Trung Le, Chulmin Bang, Philippine Cordelle, Daniel Markel, Phuc Felix Nguyen-Tan, Houda Bahig, Samuel Kadoury
Accuracies of 85. 8% and 75. 3% was found for radionecrosis and hospitalization, respectively, with similar performance as early as after the first week of treatment.
no code implementations • 6 Mar 2023 • Ralph Saber, David Henault, Rolando Rebolledo, Simon Turcotte, Samuel Kadoury
To this end, we propose an ensemble network combining multiple Attentive Interpretable Tabular learning (TabNet) models, trained using CT-derived radiomic features.
1 code implementation • 14 Dec 2022 • Malo Alefsen de Boisredon d'Assier, Eugene Vorontsov, Samuel Kadoury
Then, by teaching the model to convert images across modalities, we leverage available pixel-level annotations from the source modality to enable segmentation in the unannotated target modality.
no code implementations • 5 Jul 2021 • Eugene Vorontsov, Samuel Kadoury
In this work, we explore biased and unbiased errors artificially introduced to brain tumour annotations on MRI data.
no code implementations • 3 Aug 2020 • Hongliang Li, Tal Mezheritsky, Liset Vazquez Romaguera, Samuel Kadoury
Moreover, it is found that the speckle reduction using our deep learning model contributes to improving the 3D registration performance.
no code implementations • 28 May 2020 • William Le, Francisco Perdigón Romero, Samuel Kadoury
In medical imaging, radiological scans of different modalities serve to enhance different sets of features for clinical diagnosis and treatment planning.
no code implementations • MIDL 2019 • William Le, Francisco Perdigón Romero, Samuel Kadoury
Medical image classification performance worsens in multi-domain datasets, caused by radiological image differences across institutions, scanner manufacturer, model and operator.
no code implementations • 2 Apr 2019 • Eugene Vorontsov, Pavlo Molchanov, Christopher Beckham, Jan Kautz, Samuel Kadoury
Specifically, we propose a semi-supervised framework that employs unpaired image-to-image translation between two domains, presence vs. absence of cancer, as the unsupervised objective.
no code implementations • 28 Jan 2019 • Francisco Perdigon Romero, Andre Diler, Gabriel Bisson-Gregoire, Simon Turcotte, Real Lapointe, Franck Vandenbroucke-Menu, An Tang, Samuel Kadoury
In the present work we introduce an end-to-end deep learning approach to assist in the discrimination between liver metastases from colorectal cancer and benign cysts in abdominal CT images of the liver.
6 code implementations • 13 Jan 2019 • Patrick Bilic, Patrick Christ, Hongwei Bran Li, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivantik, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Míriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Gruen, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John Lowengrub, Jun Ma, Klaus Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yu, Liping Zhang, Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern Menze
In this work, we report the set-up and results of the Liver Tumor Segmentation Benchmark (LiTS), which was organized in conjunction with the IEEE International Symposium on Biomedical Imaging (ISBI) 2017 and the International Conferences on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2017 and 2018.
no code implementations • 11 Jan 2019 • Francisco Perdigon Romero, An Tang, Samuel Kadoury
Breast cancer is the most diagnosed cancer and the most predominant cause of death in women worldwide.
no code implementations • 6 Jun 2018 • Marc-Antoine Boucher, Sarah Lippe, Amelie Damphousse, Ramy El-Jalbout, Samuel Kadoury
The objective of this study is to develop an approach quantifying the ratio of lateral ventricular dilatation with respect to total brain volume using 3D US, which can assess the severity of macrocephaly.
no code implementations • 6 Jun 2018 • William Mandel, Olivier Turcot, Dejan Knez, Stefan Parent, Samuel Kadoury
A discriminant manifold is first constructed to maximize the separation between responsive and non-responsive groups of patients treated with AVBGM for scoliosis.
no code implementations • ICML 2017 • Eugene Vorontsov, Chiheb Trabelsi, Samuel Kadoury, Chris Pal
We find that hard constraints on orthogonality can negatively affect the speed of convergence and model performance.
no code implementations • 24 Jul 2017 • Eugene Vorontsov, An Tang, Chris Pal, Samuel Kadoury
We propose a model for the joint segmentation of the liver and liver lesions in computed tomography (CT) volumes.
no code implementations • 16 Feb 2017 • Michal Drozdzal, Gabriel Chartrand, Eugene Vorontsov, Lisa Di Jorio, An Tang, Adriana Romero, Yoshua Bengio, Chris Pal, Samuel Kadoury
Moreover, when applying our 2D pipeline on a challenging 3D MRI prostate segmentation challenge we reach results that are competitive even when compared to 3D methods.
1 code implementation • 31 Jan 2017 • Eugene Vorontsov, Chiheb Trabelsi, Samuel Kadoury, Chris Pal
We find that hard constraints on orthogonality can negatively affect the speed of convergence and model performance.
no code implementations • 17 Jan 2017 • Samuel Kadoury, William Mandel, Marjolaine Roy-Beaudry, Marie-Lyne Nault, Stefan Parent
Rate of progression is modulated from the spine flexibility and curve magnitude of the 3D spine deformation.
1 code implementation • 14 Aug 2016 • Michal Drozdzal, Eugene Vorontsov, Gabriel Chartrand, Samuel Kadoury, Chris Pal
In this paper, we study the influence of both long and short skip connections on Fully Convolutional Networks (FCN) for biomedical image segmentation.
no code implementations • 22 Jul 2016 • Mahsa Shakeri, Enzo Ferrante, Stavros Tsogkas, Sarah Lippe, Samuel Kadoury, Iasonas Kokkinos, Nikos Paragios
We propose a modular and scalable framework for dense coregistration and cosegmentation with two key characteristics: first, we substitute ground truth data with the semantic map output of a classifier; second, we combine this output with population deformable registration to improve both alignment and segmentation.
no code implementations • 5 Feb 2016 • Mahsa Shakeri, Stavros Tsogkas, Enzo Ferrante, Sarah Lippe, Samuel Kadoury, Nikos Paragios, Iasonas Kokkinos
In this paper we propose a deep learning approach for segmenting sub-cortical structures of the human brain in Magnetic Resonance (MR) image data.
no code implementations • 31 Aug 2015 • Samuel Kadoury, Eugene Vorontsov, An Tang
The early detection, diagnosis and monitoring of liver cancer progression can be achieved with the precise delineation of metastatic tumours.