The TCGA Meta-Dataset Clinical Benchmark

1 code implementation • 18 Oct 2019 • Mandana Samiei, Tobias Würfl, Tristan Deleu, Martin Weiss, Francis Dutil, Thomas Fevens, Geneviève Boucher, Sebastien Lemieux, Joseph Paul Cohen

Machine learning is bringing a paradigm shift to healthcare by changing the process of disease diagnosis and prognosis in clinics and hospitals.

Decision Making

Towards the Latent Transcriptome

1 code implementation • 8 Oct 2018 • Assya Trofimov, Francis Dutil, Claude Perreault, Sebastien Lemieux, Yoshua Bengio, Joseph Paul Cohen

In this work we propose a method to compute continuous embeddings for kmers from raw RNA-seq data, without the need for alignment to a reference genome.