1 code implementation • 21 Jul 2021 • Ninon Burgos, Mauricio Díaz, Michael Bacci, Simona Bottani, Omar El-Rifai, Sabrina Fontanella, Pietro Gori, Jérémy Guillon, Alexis Guyot, Ravi Hassanaly, Thomas Jacquemont, Pascal Lu, Arnaud Marcoux, Tristan Moreau, Jorge Samper-González, Marc Teichmann, Elina Thibeau--Sutre, Ghislain Vaillant, Junhao Wen, Adam Wild, Marie-Odile Habert, Stanley Durrleman, Alexandre Routier, Olivier Colliot
It relies on the brain imaging data structure (BIDS) for the organization of raw neuroimaging datasets and on established tools written by the community to build its pipelines.
1 code implementation • 16 Apr 2021 • Simona Bottani, Ninon Burgos, Aurélien Maire, Adam Wild, Sebastian Ströer, Didier Dormont, Olivier Colliot
In order to train/validate the CNN, the data were annotated by two trained raters according to a visual QC protocol that we specifically designed for application in the setting of a data warehouse.
no code implementations • 11 Mar 2020 • Thomas Lartigue, Simona Bottani, Stephanie Baron, Olivier Colliot, Stanley Durrleman, Stéphanie Allassonnière
We demonstrate on synthetic data that, when the sample size is small, the two methods produce graphs with either too few or too many edges when compared to the real one.
2 code implementations • 16 Apr 2019 • Junhao Wen, Elina Thibeau-Sutre, Mauricio Diaz-Melo, Jorge Samper-Gonzalez, Alexandre Routier, Simona Bottani, Didier Dormont, Stanley Durrleman, Ninon Burgos, Olivier Colliot
The different approaches generalized well to similar populations but not to datasets with different inclusion criteria or demographical characteristics.
2 code implementations • 28 Dec 2018 • Junhao Wen, Jorge Samper-Gonzalez, Simona Bottani, Alexandre Routier, Ninon Burgos, Thomas Jacquemont, Sabrina Fontanella, Stanley Durrleman, Stephane Epelbaum, Anne Bertrand, Olivier Colliot
Lastly, with proper FR and FS, the performance of diffusion MRI features is comparable to that of T1w MRI.
no code implementations • 20 Aug 2018 • Jorge Samper-González, Ninon Burgos, Simona Bottani, Sabrina Fontanella, Pascal Lu, Arnaud Marcoux, Alexandre Routier, Jérémy Guillon, Michael Bacci, Junhao Wen, Anne Bertrand, Hugo Bertin, Marie-Odile Habert, Stanley Durrleman, Theodoros Evgeniou, Olivier Colliot, for the Alzheimer's Disease Neuroimaging Initiative, the Australian Imaging Biomarkers, Lifestyle flagship study of ageing
We demonstrate the use of the framework for a large-scale evaluation on 1960 participants using T1 MRI and FDG PET data.