Leveraging Structured Biological Knowledge for Counterfactual Inference: a Case Study of Viral Pathogenesis

1 code implementation • 13 Jan 2021 • Jeremy Zucker, Kaushal Paneri, Sara Mohammad-Taheri, Somya Bhargava, Pallavi Kolambkar, Craig Bakker, Jeremy Teuton, Charles Tapley Hoyt, Kristie Oxford, Robert Ness, Olga Vitek

This manuscript proposes a general approach for querying a causal biological knowledge graph, and converting the qualitative result into a quantitative structural causal model that can learn from data to answer the question.

counterfactual Counterfactual Inference