no code implementations • 7 Mar 2024 • Gabriele Campanella, Eugene Fluder, Jennifer Zeng, Chad Vanderbilt, Thomas J. Fuchs
Artificial Intelligence (AI) has great potential to improve health outcomes by training systems on vast digitized clinical datasets.
no code implementations • 10 Oct 2023 • Gabriele Campanella, Ricky Kwan, Eugene Fluder, Jennifer Zeng, Aryeh Stock, Brandon Veremis, Alexandros D. Polydorides, Cyrus Hedvat, Adam Schoenfeld, Chad Vanderbilt, Patricia Kovatch, Carlos Cordon-Cardo, Thomas J. Fuchs
Recent breakthroughs in self-supervised learning have enabled the use of large unlabeled datasets to train visual foundation models that can generalize to a variety of downstream tasks.
no code implementations • 14 Sep 2023 • Eugene Vorontsov, Alican Bozkurt, Adam Casson, George Shaikovski, Michal Zelechowski, SiQi Liu, Kristen Severson, Eric Zimmermann, James Hall, Neil Tenenholtz, Nicolo Fusi, Philippe Mathieu, Alexander van Eck, Donghun Lee, Julian Viret, Eric Robert, Yi Kan Wang, Jeremy D. Kunz, Matthew C. H. Lee, Jan Bernhard, Ran A. Godrich, Gerard Oakley, Ewan Millar, Matthew Hanna, Juan Retamero, William A. Moye, Razik Yousfi, Christopher Kanan, David Klimstra, Brandon Rothrock, Thomas J. Fuchs
The use of artificial intelligence to enable precision medicine and decision support systems through the analysis of pathology images has the potential to revolutionize the diagnosis and treatment of cancer.
no code implementations • 20 Oct 2022 • Gabriele Campanella, Lucas Kook, Ida Häggström, Torsten Hothorn, Thomas J. Fuchs
An every increasing number of clinical trials features a time-to-event outcome and records non-tabular patient data, such as magnetic resonance imaging or text data in the form of electronic health records.
1 code implementation • 9 Aug 2022 • David Joon Ho, Narasimhan P. Agaram, Marc-Henri Jean, Stephanie D. Suser, Cynthia Chu, Chad M. Vanderbilt, Paul A. Meyers, Leonard H. Wexler, John H. Healey, Thomas J. Fuchs, Meera R. Hameed
Necrosis is routinely assessed post-chemotherapy from histology slides on resection specimens where necrosis ratio is defined as the ratio of necrotic tumor to overall tumor.
1 code implementation • 28 Mar 2022 • David Joon Ho, M. Herman Chui, Chad M. Vanderbilt, Jiwon Jung, Mark E. Robson, Chan-Sik Park, Jin Roh, Thomas J. Fuchs
Instead of annotating all pixels from cancer and non-cancer regions on giga-pixel whole slide images, an iterative process of annotating mislabeled regions from a segmentation model and training/finetuning the model with the additional annotation can reduce the time.
no code implementations • 26 Jan 2021 • Hassan Muhammad, Chensu Xie, Carlie S. Sigel, Michael Doukas, Lindsay Alpert, William R. Jarnagin, Amber Simpson, Thomas J. Fuchs
EPIC-Survival bridges encoding and aggregation into an end-to-end survival modelling approach, while introducing stratification boosting to encourage the model to not only optimize ranking, but also to discriminate between risk groups.
no code implementations • 2 Jul 2020 • David Joon Ho, Narasimhan P. Agaram, Peter J. Schueffler, Chad M. Vanderbilt, Marc-Henri Jean, Meera R. Hameed, Thomas J. Fuchs
Osteosarcoma is the most common malignant primary bone tumor.
no code implementations • MIDL 2019 • Chensu Xie, Hassan Muhammad, Chad M. Vanderbilt, Raul Caso, Dig Vijay Kumar Yarlagadda, Gabriele Campanella, Thomas J. Fuchs
A loss with respect to the slide label is backpropagated through an integrated CNN model to $k$ input tiles that are used to represent each part.
no code implementations • 29 Oct 2019 • David Joon Ho, Dig V. K. Yarlagadda, Timothy M. D'Alfonso, Matthew G. Hanna, Anne Grabenstetter, Peter Ntiamoah, Edi Brogi, Lee K. Tan, Thomas J. Fuchs
Pathologic analysis of surgical excision specimens for breast carcinoma is important to evaluate the completeness of surgical excision and has implications for future treatment.
no code implementations • 12 Mar 2019 • Hassan Muhammad, Carlie S. Sigel, Gabriele Campanella, Thomas Boerner, Linda M. Pak, Stefan Büttner, Jan N. M. IJzermans, Bas Groot Koerkamp, Michael Doukas, William R. Jarnagin, Amber Simpson, Thomas J. Fuchs
Combinations of these clusters were significant in multivariate analysis.
no code implementations • 17 May 2018 • Gabriele Campanella, Vitor Werneck Krauss Silva, Thomas J. Fuchs
In the field of computational pathology, the use of decision support systems powered by state-of-the-art deep learning solutions has been hampered by the lack of large labeled datasets.
no code implementations • 20 Apr 2018 • Ida Häggström, C. Ross Schmidtlein, Gabriele Campanella, Thomas J. Fuchs
To overcome this problem we present a novel PET image reconstruction technique based on a deep convolutional encoder-decoder network, that takes PET sinogram data as input and directly outputs full PET images.
no code implementations • 2 Aug 2016 • Peter J. Schüffler, Judy Sarungbam, Hassan Muhammad, Ed Reznik, Satish K. Tickoo, Thomas J. Fuchs
Accurate subtyping of renal cell carcinoma (RCC) is of crucial importance for understanding disease progression and for making informed treatment decisions.
no code implementations • 31 Dec 2015 • Thomas J. Fuchs, Joachim M. Buhmann
The histological assessment of human tissue has emerged as the key challenge for detection and treatment of cancer.
no code implementations • 21 Mar 2015 • Nikolaos Karianakis, Thomas J. Fuchs, Stefano Soatto
Modern detection algorithms like Regions with CNNs (Girshick et al., 2014) rely on Selective Search (Uijlings et al., 2013) to propose regions which with high probability represent objects, where in turn CNNs are deployed for classification.
no code implementations • 20 Jun 2014 • M. S. Ryoo, Thomas J. Fuchs, Lu Xia, J. K. Aggarwal, Larry Matthies
In this paper, we propose a methodology for early recognition of human activities from videos taken with a first-person viewpoint.
no code implementations • 8 Oct 2013 • Ciro Donalek, Arun Kumar A., S. G. Djorgovski, Ashish A. Mahabal, Matthew J. Graham, Thomas J. Fuchs, Michael J. Turmon, N. Sajeeth Philip, Michael Ting-Chang Yang, Giuseppe Longo
The amount of collected data in many scientific fields is increasing, all of them requiring a common task: extract knowledge from massive, multi parametric data sets, as rapidly and efficiently possible.