Search Results for author: Tijana Milenkovic

Found 10 papers, 1 papers with code

Dynamic network analysis improves protein 3D structural classification

no code implementations14 May 2021 Khalique Newaz, Jacob Piland, Patricia L. Clark, Scott J. Emrich, Jun Li, Tijana Milenkovic

Here, we propose for the first time a way to model 3D structures of proteins as dynamic PSNs, with the hypothesis that this will improve upon the current state-of-the-art PSC approaches that are based on static PSNs (and thus upon the existing state-of-the-art sequence and other 3D structural approaches).

Classification

Data-driven biological network alignment that uses topological, sequence, and functional information

no code implementations31 Jan 2020 Shawn Gu, Tijana Milenkovic

Existing NA assumes that it is topological similarity (isomorphic-like matching) between network regions that corresponds to the regions' functional relatedness.

Network Embedding

Weighted graphlets and deep neural networks for protein structure classification

no code implementations7 Oct 2019 Hongyu Guo, Khalique Newaz, Scott Emrich, Tijana Milenkovic, Jun Li

We develop a weighted network that depicts the protein structures, and more importantly, we propose the first graphlet-based measure that applies to weighted networks.

Classification General Classification

Heterogeneous network approach to predict individuals' mental health

no code implementations11 Jun 2019 Shikang Liu, Fatemeh Vahedian, David Hachen, Omar Lizardo, Christian Poellabauer, Aaron Striegel, Tijana Milenkovic

To identify individuals who are vulnerable to depression and anxiety, predictive models have been built that typically utilize data from one source.

Node Classification Recommendation Systems +1

Data-driven network alignment

no code implementations8 Feb 2019 Shawn Gu, Tijana Milenkovic

A likely reason is that they assume it is topologically similar nodes that are functionally related.

Inference of the Dynamic Aging-related Biological Subnetwork via Network Propagation

no code implementations15 Jul 2018 Khalique Newaz, Tijana Milenkovic

We use prominent existing NP methods in a new task of inferring a dynamic rather than static condition-specific (aging-related) subnetwork.

Human Aging

Pairwise versus multiple network alignment

no code implementations13 Sep 2017 Vipin Vijayan, Shawn Gu, Eric Krebs, Lei Meng, Tijana Milenkovic

Just as the recent trend in the NA field, we also focus on global NA, which can be pairwise (PNA) and multiple (MNA).

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