no code implementations • 25 May 2021 • Shawn Gu, Meng Jiang, Pietro Hiram Guzzi, Tijana Milenkovic
Prediction of node and graph labels are prominent network science tasks.
no code implementations • 14 May 2021 • Khalique Newaz, Jacob Piland, Patricia L. Clark, Scott J. Emrich, Jun Li, Tijana Milenkovic
Here, we propose for the first time a way to model 3D structures of proteins as dynamic PSNs, with the hypothesis that this will improve upon the current state-of-the-art PSC approaches that are based on static PSNs (and thus upon the existing state-of-the-art sequence and other 3D structural approaches).
no code implementations • 31 Jan 2020 • Shawn Gu, Tijana Milenkovic
Existing NA assumes that it is topological similarity (isomorphic-like matching) between network regions that corresponds to the regions' functional relatedness.
no code implementations • 7 Oct 2019 • Hongyu Guo, Khalique Newaz, Scott Emrich, Tijana Milenkovic, Jun Li
We develop a weighted network that depicts the protein structures, and more importantly, we propose the first graphlet-based measure that applies to weighted networks.
no code implementations • 6 Aug 2019 • Shikang Liu, David Hachen, Omar Lizardo, Christian Poellabauer, Aaron Striegel, Tijana Milenkovic
Precision medicine has received attention both in and outside the clinic.
no code implementations • 11 Jun 2019 • Shikang Liu, Fatemeh Vahedian, David Hachen, Omar Lizardo, Christian Poellabauer, Aaron Striegel, Tijana Milenkovic
To identify individuals who are vulnerable to depression and anxiety, predictive models have been built that typically utilize data from one source.
no code implementations • 8 Feb 2019 • Shawn Gu, Tijana Milenkovic
A likely reason is that they assume it is topologically similar nodes that are functionally related.
no code implementations • 15 Jul 2018 • Khalique Newaz, Tijana Milenkovic
We use prominent existing NP methods in a new task of inferring a dynamic rather than static condition-specific (aging-related) subnetwork.
1 code implementation • 12 Apr 2018 • Khalique Newaz, Mahboobeh Ghalehnovi, Arash Rahnama, Panos J. Antsaklis, Tijana Milenkovic
Experimental determination of protein function is resource-consuming.
no code implementations • 13 Sep 2017 • Vipin Vijayan, Shawn Gu, Eric Krebs, Lei Meng, Tijana Milenkovic
Just as the recent trend in the NA field, we also focus on global NA, which can be pairwise (PNA) and multiple (MNA).