Search Results for author: Tina Kapur

Found 11 papers, 4 papers with code

Learning Expected Appearances for Intraoperative Registration during Neurosurgery

no code implementations3 Oct 2023 Nazim Haouchine, Reuben Dorent, Parikshit Juvekar, Erickson Torio, William M. Wells III, Tina Kapur, Alexandra J. Golby, Sarah Frisken

In contrast to conventional methods, our approach transfers the processing tasks to the preoperative stage, reducing thereby the impact of low-resolution, distorted, and noisy intraoperative images, that often degrade the registration accuracy.

Image Registration

Peak learning of mass spectrometry imaging data using artificial neural networks

1 code implementation Nature Communications 2021 Walid M. Abdelmoula, Begona Gimenez-Cassina Lopez, Elizabeth C. Randall, Tina Kapur, Jann N. Sarkaria, Forest M. White, Jeffrey N. Agar, William M. Wells, Nathalie Y. R. Agar

Mass spectrometry imaging (MSI) is an emerging technology that holds potential for improving, biomarker discovery, metabolomics research, pharmaceutical applications and clinical diagnosis.

Anatomy

PEP: Parameter Ensembling by Perturbation

no code implementations NeurIPS 2020 Alireza Mehrtash, Purang Abolmaesumi, Polina Golland, Tina Kapur, Demian Wassermann, William M. Wells III

In most experiments, PEP provides a small improvement in performance, and, in some cases, a substantial improvement in empirical calibration.

Confidence Calibration and Predictive Uncertainty Estimation for Deep Medical Image Segmentation

no code implementations29 Nov 2019 Alireza Mehrtash, William M. Wells III, Clare M. Tempany, Purang Abolmaesumi, Tina Kapur

We make the following contributions: 1) We systematically compare cross entropy loss with Dice loss in terms of segmentation quality and uncertainty estimation of FCNs; 2) We propose model ensembling for confidence calibration of the FCNs trained with batch normalization and Dice loss; 3) We assess the ability of calibrated FCNs to predict segmentation quality of structures and detect out-of-distribution test examples.

Image Segmentation Medical Image Segmentation +3

Deep Information Theoretic Registration

no code implementations31 Dec 2018 Alireza Sedghi, Jie Luo, Alireza Mehrtash, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III

This paper establishes an information theoretic framework for deep metric based image registration techniques.

Image Registration

Model-based Catheter Segmentation in MRI-images

no code implementations18 May 2017 Andre Mastmeyer, Guillaume Pernelle, Lauren Barber, Steve Pieper, Dirk Fortmeier, Sandy Wells, Heinz Handels, Tina Kapur

Accurate and reliable segmentation of catheters in MR-guided interventions remains a challenge, and a step of critical importance in clinical workflows.

Segmentation

Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation

no code implementations25 Feb 2017 Mohsen Ghafoorian, Alireza Mehrtash, Tina Kapur, Nico Karssemeijer, Elena Marchiori, Mehran Pesteie, Charles R. G. Guttmann, Frank-Erik de Leeuw, Clare M. Tempany, Bram van Ginneken, Andriy Fedorov, Purang Abolmaesumi, Bram Platel, William M. Wells III

In this study, we aim to answer the following central questions regarding domain adaptation in medical image analysis: Given a fitted legacy model, 1) How much data from the new domain is required for a decent adaptation of the original network?

Domain Adaptation Lesion Segmentation +1

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