1 code implementation • 16 Apr 2024 • Deepa Krishnaswamy, Bálint Kovács, Stefan Denner, Steve Pieper, David Clunie, Christopher P. Bridge, Tina Kapur, Klaus H. Maier-Hein, Andrey Fedorov
With the wealth of medical image data, efficient curation is essential.
no code implementations • 3 Oct 2023 • Nazim Haouchine, Reuben Dorent, Parikshit Juvekar, Erickson Torio, William M. Wells III, Tina Kapur, Alexandra J. Golby, Sarah Frisken
In contrast to conventional methods, our approach transfers the processing tasks to the preoperative stage, reducing thereby the impact of low-resolution, distorted, and noisy intraoperative images, that often degrade the registration accuracy.
1 code implementation • 15 Sep 2023 • Reuben Dorent, Nazim Haouchine, Fryderyk Kögl, Samuel Joutard, Parikshit Juvekar, Erickson Torio, Alexandra Golby, Sebastien Ourselin, Sarah Frisken, Tom Vercauteren, Tina Kapur, William M. Wells
We introduce MHVAE, a deep hierarchical variational auto-encoder (VAE) that synthesizes missing images from various modalities.
1 code implementation • 15 Feb 2023 • Ruben T. Lucassen, Mohammad H. Jafari, Nicole M. Duggan, Nick Jowkar, Alireza Mehrtash, Chanel Fischetti, Denie Bernier, Kira Prentice, Erik P. Duhaime, Mike Jin, Purang Abolmaesumi, Friso G. Heslinga, Mitko Veta, Maria A. Duran-Mendicuti, Sarah Frisken, Paul B. Shyn, Alexandra J. Golby, Edward Boyer, William M. Wells, Andrew J. Goldsmith, Tina Kapur
B-line artifacts in LUS videos are key findings associated with pulmonary congestion.
1 code implementation • Nature Communications 2021 • Walid M. Abdelmoula, Begona Gimenez-Cassina Lopez, Elizabeth C. Randall, Tina Kapur, Jann N. Sarkaria, Forest M. White, Jeffrey N. Agar, William M. Wells, Nathalie Y. R. Agar
Mass spectrometry imaging (MSI) is an emerging technology that holds potential for improving, biomarker discovery, metabolomics research, pharmaceutical applications and clinical diagnosis.
no code implementations • NeurIPS 2020 • Alireza Mehrtash, Purang Abolmaesumi, Polina Golland, Tina Kapur, Demian Wassermann, William M. Wells III
In most experiments, PEP provides a small improvement in performance, and, in some cases, a substantial improvement in empirical calibration.
no code implementations • 29 Nov 2019 • Alireza Mehrtash, William M. Wells III, Clare M. Tempany, Purang Abolmaesumi, Tina Kapur
We make the following contributions: 1) We systematically compare cross entropy loss with Dice loss in terms of segmentation quality and uncertainty estimation of FCNs; 2) We propose model ensembling for confidence calibration of the FCNs trained with batch normalization and Dice loss; 3) We assess the ability of calibrated FCNs to predict segmentation quality of structures and detect out-of-distribution test examples.
no code implementations • 31 Dec 2018 • Alireza Sedghi, Jie Luo, Alireza Mehrtash, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III
This paper establishes an information theoretic framework for deep metric based image registration techniques.
no code implementations • 4 Apr 2018 • Alireza Sedghi, Jie Luo, Alireza Mehrtash, Steve Pieper, Clare M. Tempany, Tina Kapur, Parvin Mousavi, William M. Wells III
In this paper, we propose a strategy for learning such metrics from roughly aligned training data.
no code implementations • 18 May 2017 • Andre Mastmeyer, Guillaume Pernelle, Lauren Barber, Steve Pieper, Dirk Fortmeier, Sandy Wells, Heinz Handels, Tina Kapur
Accurate and reliable segmentation of catheters in MR-guided interventions remains a challenge, and a step of critical importance in clinical workflows.
no code implementations • 25 Feb 2017 • Mohsen Ghafoorian, Alireza Mehrtash, Tina Kapur, Nico Karssemeijer, Elena Marchiori, Mehran Pesteie, Charles R. G. Guttmann, Frank-Erik de Leeuw, Clare M. Tempany, Bram van Ginneken, Andriy Fedorov, Purang Abolmaesumi, Bram Platel, William M. Wells III
In this study, we aim to answer the following central questions regarding domain adaptation in medical image analysis: Given a fitted legacy model, 1) How much data from the new domain is required for a decent adaptation of the original network?