Search Results for author: Tony C. W. Mok

Found 17 papers, 7 papers with code

CycleINR: Cycle Implicit Neural Representation for Arbitrary-Scale Volumetric Super-Resolution of Medical Data

no code implementations7 Apr 2024 Wei Fang, Yuxing Tang, Heng Guo, Mingze Yuan, Tony C. W. Mok, Ke Yan, Jiawen Yao, Xin Chen, Zaiyi Liu, Le Lu, Ling Zhang, Minfeng Xu

In the realm of medical 3D data, such as CT and MRI images, prevalent anisotropic resolution is characterized by high intra-slice but diminished inter-slice resolution.

Super-Resolution

SAMConvex: Fast Discrete Optimization for CT Registration using Self-supervised Anatomical Embedding and Correlation Pyramid

1 code implementation19 Jul 2023 Zi Li, Lin Tian, Tony C. W. Mok, Xiaoyu Bai, Puyang Wang, Jia Ge, Jingren Zhou, Le Lu, Xianghua Ye, Ke Yan, Dakai Jin

Estimating displacement vector field via a cost volume computed in the feature space has shown great success in image registration, but it suffers excessive computation burdens.

Image Registration

Matching in the Wild: Learning Anatomical Embeddings for Multi-Modality Images

no code implementations7 Jul 2023 Xiaoyu Bai, Fan Bai, Xiaofei Huo, Jia Ge, Tony C. W. Mok, Zi Li, Minfeng Xu, Jingren Zhou, Le Lu, Dakai Jin, Xianghua Ye, JingJing Lu, Ke Yan

We then use this SAM to identify corresponding regions on paired images using robust grid-points matching, followed by a point-set based affine/rigid registration, and a deformable fine-tuning step to produce registered paired images.

Unsupervised 3D registration through optimization-guided cyclical self-training

1 code implementation29 Jun 2023 Alexander Bigalke, Lasse Hansen, Tony C. W. Mok, Mattias P. Heinrich

State-of-the-art deep learning-based registration methods employ three different learning strategies: supervised learning, which requires costly manual annotations, unsupervised learning, which heavily relies on hand-crafted similarity metrics designed by domain experts, or learning from synthetic data, which introduces a domain shift.

Self-Supervised Learning

Robust Image Registration with Absent Correspondences in Pre-operative and Follow-up Brain MRI Scans of Diffuse Glioma Patients

no code implementations20 Oct 2022 Tony C. W. Mok, Albert C. S. Chung

Registration of pre-operative and follow-up brain MRI scans is challenging due to the large variation of tissue appearance and missing correspondences in tumour recurrence regions caused by tumour mass effect.

Image Registration

Unsupervised Deformable Image Registration with Absent Correspondences in Pre-operative and Post-Recurrence Brain Tumor MRI Scans

1 code implementation8 Jun 2022 Tony C. W. Mok, Albert C. S. Chung

Registration of pre-operative and post-recurrence brain images is often needed to evaluate the effectiveness of brain gliomas treatment.

Image Registration

Affine Medical Image Registration with Coarse-to-Fine Vision Transformer

1 code implementation CVPR 2022 Tony C. W. Mok, Albert C. S. Chung

Comprehensive results demonstrate that our method is superior to the existing CNNs-based affine registration methods in terms of registration accuracy, robustness and generalizability while preserving the runtime advantage of the learning-based methods.

Image Registration Medical Image Registration +1

The Brain Tumor Sequence Registration (BraTS-Reg) Challenge: Establishing Correspondence Between Pre-Operative and Follow-up MRI Scans of Diffuse Glioma Patients

no code implementations13 Dec 2021 Bhakti Baheti, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey Rudie, Syed Abidi, Mina Mousa, Javier Villanueva-Meyer, Brandon K. K. Fields, Florian Kofler, Russell Takeshi Shinohara, Juan Eugenio Iglesias, Tony C. W. Mok, Albert C. S. Chung, Marek Wodzinski, Artur Jurgas, Niccolo Marini, Manfredo Atzori, Henning Muller, Christoph Grobroehmer, Hanna Siebert, Lasse Hansen, Mattias P. Heinrich, Luca Canalini, Jan Klein, Annika Gerken, Stefan Heldmann, Alessa Hering, Horst K. Hahn, Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim, Ramy A. Zeineldin, Mohamed E. Karar, Franziska Mathis-Ullrich, Oliver Burgert, Javid Abderezaei, Aymeric Pionteck, Agamdeep Chopra, Mehmet Kurt, Kewei Yan, Yonghong Yan, Zhe Tang, Jianqiang Ma, Sahar Almahfouz Nasser, Nikhil Cherian Kurian, Mohit Meena, Saqib Shamsi, Amit Sethi, Nicholas J. Tustison, Brian B. Avants, Philip Cook, James C. Gee, Lin Tian, Hastings Greer, Marc Niethammer, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Stergios Christodoulidis, Theo Estiene, Maria Vakalopoulou, Nikos Paragios, Daniel S. Marcus, Christos Davatzikos, Aristeidis Sotiras, Bjoern Menze, Spyridon Bakas, Diana Waldmannstetter

Registration of longitudinal brain MRI scans containing pathologies is challenging due to dramatic changes in tissue appearance.

Descriptive Image Registration +1

Conditional Deformable Image Registration with Convolutional Neural Network

3 code implementations23 Jun 2021 Tony C. W. Mok, Albert C. S. Chung

In this paper, we propose a conditional image registration method and a new self-supervised learning paradigm for deep deformable image registration.

Image Registration Self-Supervised Learning

Large Deformation Diffeomorphic Image Registration with Laplacian Pyramid Networks

3 code implementations29 Jun 2020 Tony C. W. Mok, Albert C. S. Chung

Deep learning-based methods have recently demonstrated promising results in deformable image registration for a wide range of medical image analysis tasks.

Image Registration

Fast Symmetric Diffeomorphic Image Registration with Convolutional Neural Networks

1 code implementation CVPR 2020 Tony C. W. Mok, Albert C. S. Chung

However, these approaches often ignore the topology preservation of the transformation and the smoothness of the transformation which is enforced by a global smoothing energy function alone.

Image Registration

Learning Data Augmentation for Brain Tumor Segmentation with Coarse-to-Fine Generative Adversarial Networks

no code implementations29 May 2018 Tony C. W. Mok, Albert C. S. Chung

While it is often easy for researchers to use data augmentation to expand the size of training sets, constructing and generating generic augmented data that is able to teach the network the desired invariance and robustness properties using traditional data augmentation techniques is challenging in practice.

Brain Tumor Segmentation Data Augmentation +1

3D Randomized Connection Network with Graph-based Label Inference

no code implementations11 Nov 2017 Siqi Bao, Pei Wang, Tony C. W. Mok, Albert C. S. Chung

In this paper, a novel 3D deep learning network is proposed for brain MR image segmentation with randomized connection, which can decrease the dependency between layers and increase the network capacity.

Image Segmentation Semantic Segmentation

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