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Found 5 papers, 0 papers with code
Dynamic Programming Algorithms for Discovery of Antibiotic Resistance in Microbial Genomes
The translation of comparative genomics into clinical decision support tools often depends on the quality of sequence alignments.
Defining Reference Sequences for Nocardia Species by Similarity and Clustering Analyses of 16S rRNA Gene Sequence Data
The most representative 16S rRNA sequences for individual Nocardia species have been identified as 'centroids' in respective clusters from which the distances to all other sequences were minimized; 110 16S rRNA gene sequences with identifications recorded only at the genus level were classified using machine learning methods.
Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments
The combination of MSA with the linear mapping hash function is a computationally efficient way of gene sequence clustering and can be a valuable tool for the assessment of similarity, clustering of different microbial genomes, identifying reference sequences, and for the study of evolution of bacteria and viruses.
Persistence of the Omicron variant of SARS-CoV-2 in Australia: The impact of fluctuating social distancing
Our study delineated distinct phases of the Omicron-associated pandemic stage, and retrospectively quantified the adoption of social distancing measures, fluctuating over different time periods in response to the observable incidence dynamics.
Genome-wide networks reveal emergence of epidemic strains of Salmonella Enteritidis
Results: Outbreak isolates were identifiable as distinct components on the MLVA and SNP networks.
