Search Results for author: Xiang Zhuang

Found 7 papers, 4 papers with code

StableMask: Refining Causal Masking in Decoder-only Transformer

no code implementations7 Feb 2024 Qingyu Yin, Xuzheng He, Xiang Zhuang, Yu Zhao, Jianhua Yao, Xiaoyu Shen, Qiang Zhang

The decoder-only Transformer architecture with causal masking and relative position encoding (RPE) has become the de facto choice in language modeling.

Language Modelling Position

Scientific Large Language Models: A Survey on Biological & Chemical Domains

1 code implementation26 Jan 2024 Qiang Zhang, Keyang Ding, Tianwen Lyv, Xinda Wang, Qingyu Yin, Yiwen Zhang, Jing Yu, Yuhao Wang, Xiaotong Li, Zhuoyi Xiang, Xiang Zhuang, Zeyuan Wang, Ming Qin, Mengyao Zhang, Jinlu Zhang, Jiyu Cui, Renjun Xu, Hongyang Chen, Xiaohui Fan, Huabin Xing, Huajun Chen

Large Language Models (LLMs) have emerged as a transformative power in enhancing natural language comprehension, representing a significant stride toward artificial general intelligence.

InstructProtein: Aligning Human and Protein Language via Knowledge Instruction

no code implementations5 Oct 2023 Zeyuan Wang, Qiang Zhang, Keyan Ding, Ming Qin, Xiang Zhuang, Xiaotong Li, Huajun Chen

To address this challenge, we propose InstructProtein, an innovative LLM that possesses bidirectional generation capabilities in both human and protein languages: (i) taking a protein sequence as input to predict its textual function description and (ii) using natural language to prompt protein sequence generation.

Knowledge Graphs Protein Function Prediction +1

Graph Sampling-based Meta-Learning for Molecular Property Prediction

1 code implementation29 Jun 2023 Xiang Zhuang, Qiang Zhang, Bin Wu, Keyan Ding, Yin Fang, Huajun Chen

To effectively utilize many-to-many correlations of molecules and properties, we propose a Graph Sampling-based Meta-learning (GS-Meta) framework for few-shot molecular property prediction.

Graph Sampling Meta-Learning +2

Molecular Contrastive Learning with Chemical Element Knowledge Graph

1 code implementation1 Dec 2021 Yin Fang, Qiang Zhang, Haihong Yang, Xiang Zhuang, Shumin Deng, Wen Zhang, Ming Qin, Zhuo Chen, Xiaohui Fan, Huajun Chen

To address these issues, we construct a Chemical Element Knowledge Graph (KG) to summarize microscopic associations between elements and propose a novel Knowledge-enhanced Contrastive Learning (KCL) framework for molecular representation learning.

Contrastive Learning Molecular Property Prediction +3

Knowledge-aware Contrastive Molecular Graph Learning

no code implementations24 Mar 2021 Yin Fang, Haihong Yang, Xiang Zhuang, Xin Shao, Xiaohui Fan, Huajun Chen

Leveraging domain knowledge including fingerprints and functional groups in molecular representation learning is crucial for chemical property prediction and drug discovery.

Contrastive Learning Drug Discovery +5

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