Search Results for author: Xiaohui Fan

Found 7 papers, 5 papers with code

ChatCell: Facilitating Single-Cell Analysis with Natural Language

1 code implementation13 Feb 2024 Yin Fang, Kangwei Liu, Ningyu Zhang, Xinle Deng, Penghui Yang, Zhuo Chen, Xiangru Tang, Mark Gerstein, Xiaohui Fan, Huajun Chen

As Large Language Models (LLMs) rapidly evolve, their influence in science is becoming increasingly prominent.

Scientific Large Language Models: A Survey on Biological & Chemical Domains

1 code implementation26 Jan 2024 Qiang Zhang, Keyang Ding, Tianwen Lyv, Xinda Wang, Qingyu Yin, Yiwen Zhang, Jing Yu, Yuhao Wang, Xiaotong Li, Zhuoyi Xiang, Xiang Zhuang, Zeyuan Wang, Ming Qin, Mengyao Zhang, Jinlu Zhang, Jiyu Cui, Renjun Xu, Hongyang Chen, Xiaohui Fan, Huabin Xing, Huajun Chen

Large Language Models (LLMs) have emerged as a transformative power in enhancing natural language comprehension, representing a significant stride toward artificial general intelligence.

Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models

1 code implementation13 Jun 2023 Yin Fang, Xiaozhuan Liang, Ningyu Zhang, Kangwei Liu, Rui Huang, Zhuo Chen, Xiaohui Fan, Huajun Chen

Large Language Models (LLMs), with their remarkable task-handling capabilities and innovative outputs, have catalyzed significant advancements across a spectrum of fields.

Catalytic activity prediction Chemical-Disease Interaction Extraction +14

Domain-Agnostic Molecular Generation with Chemical Feedback

1 code implementation26 Jan 2023 Yin Fang, Ningyu Zhang, Zhuo Chen, Lingbing Guo, Xiaohui Fan, Huajun Chen

The generation of molecules with desired properties has become increasingly popular, revolutionizing the way scientists design molecular structures and providing valuable support for chemical and drug design.

Language Modelling Molecular Docking +1

Knowledge-informed Molecular Learning: A Survey on Paradigm Transfer

no code implementations17 Feb 2022 Yin Fang, Zhuo Chen, Xiaohui Fan, Ningyu Zhang

To enhance the generation and decipherability of purely data-driven models, scholars have integrated biochemical domain knowledge into these molecular study models.

Molecular Property Prediction Property Prediction

Molecular Contrastive Learning with Chemical Element Knowledge Graph

1 code implementation1 Dec 2021 Yin Fang, Qiang Zhang, Haihong Yang, Xiang Zhuang, Shumin Deng, Wen Zhang, Ming Qin, Zhuo Chen, Xiaohui Fan, Huajun Chen

To address these issues, we construct a Chemical Element Knowledge Graph (KG) to summarize microscopic associations between elements and propose a novel Knowledge-enhanced Contrastive Learning (KCL) framework for molecular representation learning.

Contrastive Learning Molecular Property Prediction +3

Knowledge-aware Contrastive Molecular Graph Learning

no code implementations24 Mar 2021 Yin Fang, Haihong Yang, Xiang Zhuang, Xin Shao, Xiaohui Fan, Huajun Chen

Leveraging domain knowledge including fingerprints and functional groups in molecular representation learning is crucial for chemical property prediction and drug discovery.

Contrastive Learning Drug Discovery +5

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