no code implementations • 19 Sep 2023 • Yikuan Li, Hanyin Wang, Halid Yerebakan, Yoshihisa Shinagawa, Yuan Luo
In this study, we investigated the ability of the large language model (LLM) to enhance healthcare data interoperability.
no code implementations • 15 Sep 2023 • Yikuan Li, Chengsheng Mao, Kaixuan Huang, Hanyin Wang, Zheng Yu, Mengdi Wang, Yuan Luo
Scarcity of health care resources could result in the unavoidable consequence of rationing.
1 code implementation • 20 Feb 2023 • Zheng Yu, Yikuan Li, Joseph Kim, Kaixuan Huang, Yuan Luo, Mengdi Wang
In this work, we use reinforcement learning (RL) to find a dynamic policy that selects lab test panels sequentially based on previous observations, ensuring accurate testing at a low cost.
1 code implementation • 27 Jan 2023 • Yikuan Li, Ramsey M. Wehbe, Faraz S. Ahmad, Hanyin Wang, Yuan Luo
Objective: Clinical knowledge enriched transformer models (e. g., ClinicalBERT) have state-of-the-art results on clinical NLP (natural language processing) tasks.
no code implementations • 7 Nov 2022 • Chengsheng Mao, Jie Xu, Luke Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer Pacheco, Borna Bonakdarpour, Robert Vassar, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo
Materials and Methods: We identified 3657 patients diagnosed with MCI together with their progress notes from Northwestern Medicine Enterprise Data Warehouse (NMEDW) between 2000-2020.
no code implementations • 5 Jul 2022 • Hanyin Wang, Meghan R. Hutch, Yikuan Li, Adrienne S. Kline, Sebastian Otero, Leena B. Mithal, Emily S. Miller, Andrew Naidech, Yuan Luo
We analyzed COVID-19 vaccine-related tweets to understand the evolving perceptions of COVID-19 vaccines.
no code implementations • 15 May 2022 • Yikuan Li, Mohammad Mamouei, Shishir Rao, Abdelaali Hassaine, Dexter Canoy, Thomas Lukasiewicz, Kazem Rahimi, Gholamreza Salimi-Khorshidi
Most machine learning (ML) models are developed for prediction only; offering no option for causal interpretation of their predictions or parameters/properties.
no code implementations • 10 Apr 2022 • Adrienne Kline, Hanyin Wang, Yikuan Li, Saya Dennis, Meghan Hutch, Zhenxing Xu, Fei Wang, Feixiong Cheng, Yuan Luo
Attempts to improve prediction and resemble the multimodal nature of clinical expert decision-making this has been met in the computational field of machine learning by a fusion of disparate data.
no code implementations • 7 Feb 2022 • Shishir Rao, Mohammad Mamouei, Gholamreza Salimi-Khorshidi, Yikuan Li, Rema Ramakrishnan, Abdelaali Hassaine, Dexter Canoy, Kazem Rahimi
The rise of "doubly robust" non-parametric tools coupled with the growth of deep learning for capturing rich representations of multimodal data, offers a unique opportunity to develop and test such models for causal inference on comprehensive electronic health records (EHR).
1 code implementation • 27 Jan 2022 • Yikuan Li, Ramsey M. Wehbe, Faraz S. Ahmad, Hanyin Wang, Yuan Luo
To overcome this, long sequence transformer models, e. g. Longformer and BigBird, were proposed with the idea of sparse attention mechanism to reduce the memory usage from quadratic to the sequence length to a linear scale.
no code implementations • 15 Dec 2021 • Hanyin Wang, Yikuan Li, Andrew Naidech, Yuan Luo
On the 5, 783 sepsis patients identified by the Sepsis-3 criteria statistically significant performance decreases for mortality prediction were observed when applying the trained machine learning model on Asian and Hispanic patients.
no code implementations • 9 Nov 2021 • Jiyoung Shin, Yikuan Li, Yuan Luo
We built and applied several machine learning models to predict the risk of hospital mortality and 30-day mortality in sepsis patients.
no code implementations • 27 Jul 2021 • Jose Roberto Ayala Solares, Yajie Zhu, Abdelaali Hassaine, Shishir Rao, Yikuan Li, Mohammad Mamouei, Dexter Canoy, Kazem Rahimi, Gholamreza Salimi-Khorshidi
In this study, we aim to (1) train some of the most prominent disease embedding techniques on a comprehensive EHR data from 3. 1 million patients, (2) employ qualitative and quantitative evaluation techniques to assess these embeddings, and (3) provide pre-trained disease embeddings for transfer learning.
no code implementations • 21 Jun 2021 • Yikuan Li, Mohammad Mamouei, Gholamreza Salimi-Khorshidi, Shishir Rao, Abdelaali Hassaine, Dexter Canoy, Thomas Lukasiewicz, Kazem Rahimi
Capturing the whole history of medical encounters is expected to lead to more accurate predictions, but the inclusion of records collected for decades and from multiple resources can inevitably exceed the receptive field of the existing deep learning architectures.
no code implementations • 17 Feb 2021 • Yikuan Li, Shishir Rao, Mohammad Mamouei, Gholamreza Salimi-Khorshidi, Dexter Canoy, Abdelaali Hassaine, Thomas Lukasiewicz, Kazem Rahimi
In this study, we propose two methods, namely, model distillation and variable selection, to untangle hidden patterns learned by an established deep learning model (BEHRT) for risk association identification.
no code implementations • 27 Jan 2021 • Shishir Rao, Yikuan Li, Rema Ramakrishnan, Abdelaali Hassaine, Dexter Canoy, John Cleland, Thomas Lukasiewicz, Gholamreza Salimi-Khorshidi, Kazem Rahimi
Predicting the incidence of complex chronic conditions such as heart failure is challenging.
1 code implementation • 3 Sep 2020 • Yikuan Li, Hanyin Wang, Yuan Luo
Joint image-text embedding extracted from medical images and associated contextual reports is the bedrock for most biomedical vision-and-language (V+L) tasks, including medical visual question answering, clinical image-text retrieval, clinical report auto-generation.
no code implementations • 23 Mar 2020 • Yikuan Li, Shishir Rao, Abdelaali Hassaine, Rema Ramakrishnan, Yajie Zhu, Dexter Canoy, Gholamreza Salimi-Khorshidi, Thomas Lukasiewicz, Kazem Rahimi
In this paper, we merge features of the deep Bayesian learning framework with deep kernel learning to leverage the strengths of both methods for more comprehensive uncertainty estimation.
1 code implementation • 22 Jul 2019 • Yikuan Li, Shishir Rao, Jose Roberto Ayala Solares, Abdelaali Hassaine, Dexter Canoy, Yajie Zhu, Kazem Rahimi, Gholamreza Salimi-Khorshidi
Today, despite decades of developments in medicine and the growing interest in precision healthcare, vast majority of diagnoses happen once patients begin to show noticeable signs of illness.
no code implementations • 19 Jul 2019 • Abdelaali Hassaine, Dexter Canoy, Jose Roberto Ayala Solares, Yajie Zhu, Shishir Rao, Yikuan Li, Mariagrazia Zottoli, Kazem Rahimi, Gholamreza Salimi-Khorshidi
Multimorbidity, or the presence of several medical conditions in the same individual, has been increasing in the population, both in absolute and relative terms.
no code implementations • 20 Mar 2019 • Yikuan Li, Yajie Zhu
Deep Bayesian neural network has aroused a great attention in recent years since it combines the benefits of deep neural network and probability theory.
no code implementations • 7 Nov 2018 • Yikuan Li, Liang Yao, Chengsheng Mao, Anand Srivastava, Xiaoqian Jiang, Yuan Luo
We developed data-driven prediction models to estimate the risk of new AKI onset.