no code implementations • 10 Apr 2024 • Yingbo Ma, Suraj Kolla, Zhenhong Hu, Dhruv Kaliraman, Victoria Nolan, Ziyuan Guan, Yuanfang Ren, Brooke Armfield, Tezcan Ozrazgat-Baslanti, Jeremy A. Balch, Tyler J. Loftus, Parisa Rashidi, Azra Bihorac, Benjamin Shickel
To harness the interconnected relationships between medical time series and clinical notes, the framework equips a global contrastive loss, aligning a patient's multimodal feature representations with the corresponding discharge summaries.
no code implementations • 9 Apr 2024 • Yonggi Park, Yuanfang Ren, Benjamin Shickel, Ziyuan Guan, Ayush Patela, Yingbo Ma, Zhenhong Hu, Tyler J. Loftus, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
Federated learning models achieved comparable AUROC performance to central learning models, except for prolonged ICU stay, where the performance of federated learning models was slightly higher than central learning models at UFH GNV center, but slightly lower at UFH JAX center.
no code implementations • 11 Mar 2024 • Brandon Silva, Miguel Contreras, Sabyasachi Bandyopadhyay, Yuanfang Ren, Ziyuan Guan, Jeremy Balch, Kia Khezeli, Tezcan Ozrazgat Baslanti, Ben Shickel, Azra Bihorac, Parisa Rashidi
Our research fills these gaps in the existing literature by dynamically predicting delirium, coma, and mortality for 12-hour intervals throughout an ICU stay and validating on two public datasets.
no code implementations • 6 Mar 2024 • Yingbo Ma, Suraj Kolla, Dhruv Kaliraman, Victoria Nolan, Zhenhong Hu, Ziyuan Guan, Yuanfang Ren, Brooke Armfield, Tezcan Ozrazgat-Baslanti, Tyler J. Loftus, Parisa Rashidi, Azra Bihorac, Benjamin Shickel
The breadth, scale, and temporal granularity of modern electronic health records (EHR) systems offers great potential for estimating personalized and contextual patient health trajectories using sequential deep learning.
no code implementations • 6 Feb 2024 • Esra Adiyeke, Yuanfang Ren, Benjamin Shickel, Matthew M. Ruppert, Ziyuan Guan, Sandra L. Kane-Gill, Raghavan Murugan, Nabihah Amatullah, Britney A. Stottlemyer, Tiffany L. Tran, Dan Ricketts, Christopher M Horvat, Parisa Rashidi, Azra Bihorac, Tezcan Ozrazgat-Baslanti
We trained local models for each site (UFH Model trained on UFH, UPMC Model trained on UPMC) and a separate model with a development cohort of patients from both sites (UFH-UPMC Model).
no code implementations • 3 Nov 2023 • Miguel Contreras, Brandon Silva, Benjamin Shickel, Tezcan Ozrazgat-Baslanti, Yuanfang Ren, Ziyuan Guan, Jeremy Balch, Jiaqing Zhang, Sabyasachi Bandyopadhyay, Kia Khezeli, Azra Bihorac, Parisa Rashidi
The acuity state of patients in the intensive care unit (ICU) can quickly change from stable to unstable.
no code implementations • 1 Nov 2023 • Subhash Nerella, Ziyuan Guan, Andrea Davidson, Yuanfang Ren, Tezcan Baslanti, Brooke Armfield, Patrick Tighe, Azra Bihorac, Parisa Rashidi
We leveraged our AU-ICU dataset with 107, 064 frames collected in the ICU annotated with facial action units (AUs) labels by trained annotators.
no code implementations • 27 Jul 2023 • Yuanfang Ren, Yanjun Li, Tyler J. Loftus, Jeremy Balch, Kenneth L. Abbott, Shounak Datta, Matthew M. Ruppert, Ziyuan Guan, Benjamin Shickel, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
With clustering analysis for vital signs within six hours of admission, patient phenotypes with distinct pathophysiological signatures and outcomes may support early clinical decisions.
no code implementations • 13 Mar 2023 • Brandon Silva, Miguel Contreras, Tezcan Ozrazgat Baslanti, Yuanfang Ren, Guan Ziyuan, Kia Khezeli, Azra Bihorac, Parisa Rashidi
In this work, we develop a machine learning system for real-time prediction of ADB using Electronic Health Record (HER) data.
no code implementations • 9 Mar 2023 • Yuanfang Ren, Tyler J. Loftus, Ziyuan Guan, Rayon Uddin, Benjamin Shickel, Carolina B. Maciel, Katharina Busl, Parisa Rashidi, Azra Bihorac, Tezcan Ozrazgat-Baslanti
We developed algorithms to quantify acute brain dysfunction status including coma, delirium, normal, or death at 12-hour intervals of each ICU admission and to identify acute brain dysfunction phenotypes using continuous acute brain dysfunction status and k-means clustering approach.
no code implementations • 8 Mar 2023 • Esra Adiyeke, Yuanfang Ren, Ziyuan Guan, Matthew M. Ruppert, Parisa Rashidi, Azra Bihorac, Tezcan Ozrazgat-Baslanti
At 14 days following Stage 1 AKI, patients with more frail conditions (Charlson comorbidity index greater than or equal to 3 and had prolonged ICU stay) had lower proportion of transitioning to No AKI or discharge states.
no code implementations • 27 Apr 2020 • Yanjun Li, Yuanfang Ren, Tyler J. Loftus, Shounak Datta, M. Ruppert, Ziyuan Guan, Dapeng Wu, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
M Interpretation: In a heterogeneous cohort of hospitalized patients, a deep interpolation network extracted representations from vital sign data measured within six hours of hospital admission.
no code implementations • 27 Apr 2020 • Yuanfang Ren, Jeremy Balch, Kenneth L. Abbott, Tyler J. Loftus, Benjamin Shickel, Parisa Rashidi, Azra Bihorac, Tezcan Ozrazgat-Baslanti
We gathered two single-center, longitudinal electronic health record datasets for 51, 372 adult ICU patients admitted to the University of Florida Health (UFH) Gainesville (GNV) and Jacksonville (JAX).