no code implementations • 8 Mar 2024 • Xin Zhu, Hongyi Pan, Yury Velichko, Adam B. Murphy, Ashley Ross, Baris Turkbey, Ahmet Enis Cetin, Ulas Bagci
Random samples drawn from latent space are then incorporated with a prototypical corrected image to generate multiple plausible images.
1 code implementation • 17 Jan 2024 • Debesh Jha, Nikhil Kumar Tomar, Koushik Biswas, Gorkem Durak, Alpay Medetalibeyoglu, Matthew Antalek, Yury Velichko, Daniela Ladner, Amir Borhani, Ulas Bagci
Accurate liver segmentation from CT scans is essential for effective diagnosis and treatment planning.
Ranked #5 on Liver Segmentation on LiTS2017
no code implementations • 29 Nov 2023 • Koushik Biswas, Debesh Jha, Nikhil Kumar Tomar, Gorkem Durak, Alpay Medetalibeyoglu, Matthew Antalek, Yury Velichko, Daniela Ladner, Amir Bohrani, Ulas Bagci
We apply this new activation function to two important and commonly used general tasks in medical image analysis: automatic disease diagnosis and organ segmentation in CT and MRI.
1 code implementation • 22 Nov 2023 • Amirhossein Kazerouni, Sanaz Karimijafarbigloo, Reza Azad, Yury Velichko, Ulas Bagci, Dorit Merhof
Semantic segmentation, a crucial task in computer vision, often relies on labor-intensive and costly annotated datasets for training.
no code implementations • 21 Nov 2023 • Sanaz Karimijafarbigloo, Reza Azad, Yury Velichko, Ulas Bagci, Dorit Merhof
Current 3D semi-supervised segmentation methods face significant challenges such as limited consideration of contextual information and the inability to generate reliable pseudo-labels for effective unsupervised data use.
1 code implementation • 21 Nov 2023 • Afshin Bozorgpour, Bobby Azad, Reza Azad, Yury Velichko, Ulas Bagci, Dorit Merhof
In addition, we introduce a skeletal loss term to reinforce the model's geometric dependence on the spine.
no code implementations • 2 Oct 2023 • Ariana M. Familiar, Anahita Fathi Kazerooni, Hannah Anderson, Aliaksandr Lubneuski, Karthik Viswanathan, Rocky Breslow, Nastaran Khalili, Sina Bagheri, Debanjan Haldar, Meen Chul Kim, Sherjeel Arif, Rachel Madhogarhia, Thinh Q. Nguyen, Elizabeth A. Frenkel, Zeinab Helili, Jessica Harrison, Keyvan Farahani, Marius George Linguraru, Ulas Bagci, Yury Velichko, Jeffrey Stevens, Sarah Leary, Robert M. Lober, Stephani Campion, Amy A. Smith, Denise Morinigo, Brian Rood, Kimberly Diamond, Ian F. Pollack, Melissa Williams, Arastoo Vossough, Jeffrey B. Ware, Sabine Mueller, Phillip B. Storm, Allison P. Heath, Angela J. Waanders, Jena V. Lilly, Jennifer L. Mason, Adam C. Resnick, Ali Nabavizadeh
Pediatric brain and spinal cancers remain the leading cause of cancer-related death in children.
1 code implementation • 31 Aug 2023 • Reza Azad, Leon Niggemeier, Michael Huttemann, Amirhossein Kazerouni, Ehsan Khodapanah Aghdam, Yury Velichko, Ulas Bagci, Dorit Merhof
To address these challenges, we introduce the concept of \textbf{Deformable Large Kernel Attention (D-LKA Attention)}, a streamlined attention mechanism employing large convolution kernels to fully appreciate volumetric context.
1 code implementation • 31 Aug 2023 • Sanaz Karimijafarbigloo, Reza Azad, Amirhossein Kazerouni, Yury Velichko, Ulas Bagci, Dorit Merhof
Accurate medical image segmentation is of utmost importance for enabling automated clinical decision procedures.
1 code implementation • 31 Aug 2023 • Reza Azad, Amirhossein Kazerouni, Babak Azad, Ehsan Khodapanah Aghdam, Yury Velichko, Ulas Bagci, Dorit Merhof
Vision Transformer (ViT) models have demonstrated a breakthrough in a wide range of computer vision tasks.
no code implementations • 12 May 2023 • Dominic LaBella, Maruf Adewole, Michelle Alonso-Basanta, Talissa Altes, Syed Muhammad Anwar, Ujjwal Baid, Timothy Bergquist, Radhika Bhalerao, Sully Chen, Verena Chung, Gian-Marco Conte, Farouk Dako, James Eddy, Ivan Ezhov, Devon Godfrey, Fathi Hilal, Ariana Familiar, Keyvan Farahani, Juan Eugenio Iglesias, Zhifan Jiang, Elaine Johanson, Anahita Fathi Kazerooni, Collin Kent, John Kirkpatrick, Florian Kofler, Koen van Leemput, Hongwei Bran Li, Xinyang Liu, Aria Mahtabfar, Shan McBurney-Lin, Ryan McLean, Zeke Meier, Ahmed W Moawad, John Mongan, Pierre Nedelec, Maxence Pajot, Marie Piraud, Arif Rashid, Zachary Reitman, Russell Takeshi Shinohara, Yury Velichko, Chunhao Wang, Pranav Warman, Walter Wiggins, Mariam Aboian, Jake Albrecht, Udunna Anazodo, Spyridon Bakas, Adam Flanders, Anastasia Janas, Goldey Khanna, Marius George Linguraru, Bjoern Menze, Ayman Nada, Andreas M Rauschecker, Jeff Rudie, Nourel Hoda Tahon, Javier Villanueva-Meyer, Benedikt Wiestler, Evan Calabrese
Meningiomas are the most common primary intracranial tumor in adults and can be associated with significant morbidity and mortality.