Search Results for author: Zhaofeng Ye

Found 3 papers, 2 papers with code

Multi-task Bioassay Pre-training for Protein-ligand Binding Affinity Prediction

1 code implementation8 Jun 2023 Jiaxian Yan, Zhaofeng Ye, ZiYi Yang, Chengqiang Lu, Shengyu Zhang, Qi Liu, Jiezhong Qiu

By introducing multi-task pre-training to treat the prediction of different affinity labels as different tasks and classifying relative rankings between samples from the same bioassay, MBP learns robust and transferrable structural knowledge from our new ChEMBL-Dock dataset with varied and noisy labels.

Drug Discovery

Protein-Ligand Complex Generator & Drug Screening via Tiered Tensor Transform

1 code implementation3 Jan 2023 Jonathan P. Mailoa, Zhaofeng Ye, Jiezhong Qiu, Chang-Yu Hsieh, Shengyu Zhang

The generation of small molecule candidate (ligand) binding poses in its target protein pocket is important for computer-aided drug discovery.

Drug Discovery

SPLDExtraTrees: Robust machine learning approach for predicting kinase inhibitor resistance

no code implementations15 Nov 2021 ZiYi Yang, Zhaofeng Ye, Yijia Xiao, ChangYu Hsieh, Shengyu Zhang

Drug resistance is a major threat to the global health and a significant concern throughout the clinical treatment of diseases and drug development.

BIG-bench Machine Learning

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