1 code implementation • SMM4H (COLING) 2020 • Zulfat Miftahutdinov, Andrey Sakhovskiy, Elena Tutubalina
The BERT-based multilingual model for classification of English and Russian tweets that report adverse reactions ranked second among 16 and 7 teams at two first subtasks of the SMM4H 2019 Task 2 and obtained a relaxed F1 of 58% on English tweets and 51% on Russian tweets.
no code implementations • NAACL (SMM4H) 2021 • Andrey Sakhovskiy, Zulfat Miftahutdinov, Elena Tutubalina
This paper describes neural models developed for the Social Media Mining for Health (SMM4H) 2021 Shared Task.
1 code implementation • LREC 2022 • Anton Alekseev, Zulfat Miftahutdinov, Elena Tutubalina, Artem Shelmanov, Vladimir Ivanov, Vladimir Kokh, Alexander Nesterov, Manvel Avetisian, Andrei Chertok, Sergey Nikolenko
Medical data annotation requires highly qualified expertise.
no code implementations • SMM4H (COLING) 2020 • Ari Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O’Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez
The vast amount of data on social media presents significant opportunities and challenges for utilizing it as a resource for health informatics.
no code implementations • NAACL (SMM4H) 2021 • Arjun Magge, Ari Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulalia Farre, Salvador Lima López, Ivan Flores, Karen O’Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
The global growth of social media usage over the past decade has opened research avenues for mining health related information that can ultimately be used to improve public health.
no code implementations • Findings (ACL) 2022 • Alexandr Nesterov, Galina Zubkova, Zulfat Miftahutdinov, Vladimir Kokh, Elena Tutubalina, Artem Shelmanov, Anton Alekseev, Manvel Avetisian, Andrey Chertok, Sergey Nikolenko
We present RuCCoN, a new dataset for clinical concept normalization in Russian manually annotated by medical professionals.
no code implementations • 21 Nov 2023 • Micha Livne, Zulfat Miftahutdinov, Elena Tutubalina, Maksim Kuznetsov, Daniil Polykovskiy, Annika Brundyn, Aastha Jhunjhunwala, Anthony Costa, Alex Aliper, Alex Zhavoronkov
Large Language Models (LLMs) have substantially driven scientific progress in various domains, and many papers have demonstrated their ability to tackle complex problems with creative solutions.
1 code implementation • 22 Jan 2021 • Zulfat Miftahutdinov, Artur Kadurin, Roman Kudrin, Elena Tutubalina
We investigate the effectiveness of transferring concept normalization from the general biomedical domain to the clinical trials domain in a zero-shot setting with an absence of labeled data.
1 code implementation • COLING 2020 • Elena Tutubalina, Artur Kadurin, Zulfat Miftahutdinov
Linking of biomedical entity mentions to various terminologies of chemicals, diseases, genes, adverse drug reactions is a challenging task, often requiring non-syntactic interpretation.
1 code implementation • 7 Apr 2020 • Elena Tutubalina, Ilseyar Alimova, Zulfat Miftahutdinov, Andrey Sakhovskiy, Valentin Malykh, Sergey Nikolenko
For the sentence classification task, our model achieves the macro F1 score of 68. 82% gaining 7. 47% over the score of BERT model trained on Russian data.
no code implementations • 16 Aug 2019 • Sergey Nikolenko, Elena Tutubalina, Zulfat Miftahutdinov, Eugene Beloded
We introduce an entity-centric search engineCommentsRadarthatpairs entity queries with articles and user opinions covering a widerange of topics from top commented sites.
no code implementations • WS 2019 • Zulfat Miftahutdinov, Ilseyar Alimova, Elena Tutubalina
The end-to-end model based on BERT for ADR normalization ranked first at the SMM4H 2019 Task 3 and obtained a relaxed F1 of 43. 2{\%}.
no code implementations • ACL 2019 • Zulfat Miftahutdinov, Elena Tutubalina
In this work, we consider the medical concept normalization problem, i. e., the problem of mapping a health-related entity mention in a free-form text to a concept in a controlled vocabulary, usually to the standard thesaurus in the Unified Medical Language System (UMLS).
no code implementations • 28 Nov 2018 • Elena Tutubalina, Zulfat Miftahutdinov, Sergey Nikolenko, Valentin Malykh
In this work, we consider the medical concept normalization problem, i. e., the problem of mapping a disease mention in free-form text to a concept in a controlled vocabulary, usually to the standard thesaurus in the Unified Medical Language System (UMLS).
no code implementations • 4 Dec 2017 • Elena Tutubalina, Zulfat Miftahutdinov
Information extraction from textual documents such as hospital records and healthrelated user discussions has become a topic of intense interest.