BindingDB (The Binding Database)

BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules. As of May 27, 2022, BindingDB contains 41,296 Entries, each with a DOI, containing 2,519,702 binding data for 8,810 protein targets and 1,080,101 small molecules. There are 5,988 protein-ligand crystal structures with BindingDB affinity measurements for proteins with 100% sequence identity, and 11,442 crystal structures allowing proteins to 85% sequence identity.You can also use BindingDB data through the Registry of Open Data on AWS: https://registry.opendata.aws/binding-db. This dataset using the split by TransformerCPI(doi.org/10.1093/bioinformatics/btaa524)

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