Extracting Biological Pathway Models From NLP Event Representations

WS 2015 · Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh ·

This paper describes an an open-source software system for the automatic conversion of NLP event representations to system biology structured data interchange formats such as SBML and BioPAX. It is part of a larger effort to make results of the NLP community available for system biology pathway modelers.

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