BioAMA: Towards an End to End BioMedical Question Answering System
In this paper, we present a novel Biomedical Question Answering system, BioAMA: {``}Biomedical Ask Me Anything{''} on task 5b of the annual BioASQ challenge. In this work, we focus on a wide variety of question types including factoid, list based, summary and yes/no type questions that generate both exact and well-formed {`}ideal{'} answers. For summary-type questions, we combine effective IR-based techniques for retrieval and diversification of relevant snippets for a question to create an end-to-end system which achieves a ROUGE-2 score of 0.72 and a ROUGE-SU4 score of 0.71 on ideal answer questions (7{\%} improvement over the previous best model). Additionally, we propose a novel NLI-based framework to answer the yes/no questions. To train the NLI model, we also devise a transfer-learning technique by cross-domain projection of word embeddings. Finally, we present a two-stage approach to address the factoid and list type questions by first generating a candidate set using NER taggers and ranking them using both supervised or unsupervised techniques.
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