CE-Net: Context Encoder Network for 2D Medical Image Segmentation

Medical image segmentation is an important step in medical image analysis. With the rapid development of convolutional neural network in image processing, deep learning has been used for medical image segmentation, such as optic disc segmentation, blood vessel detection, lung segmentation, cell segmentation, etc. Previously, U-net based approaches have been proposed. However, the consecutive pooling and strided convolutional operations lead to the loss of some spatial information. In this paper, we propose a context encoder network (referred to as CE-Net) to capture more high-level information and preserve spatial information for 2D medical image segmentation. CE-Net mainly contains three major components: a feature encoder module, a context extractor and a feature decoder module. We use pretrained ResNet block as the fixed feature extractor. The context extractor module is formed by a newly proposed dense atrous convolution (DAC) block and residual multi-kernel pooling (RMP) block. We applied the proposed CE-Net to different 2D medical image segmentation tasks. Comprehensive results show that the proposed method outperforms the original U-Net method and other state-of-the-art methods for optic disc segmentation, vessel detection, lung segmentation, cell contour segmentation and retinal optical coherence tomography layer segmentation.

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Results from the Paper


Task Dataset Model Metric Name Metric Value Global Rank Result Benchmark
Retinal Vessel Segmentation DRIVE CE-Net AUC 0.9779 # 10
Accuracy 0.9545 # 8
Medical Image Segmentation ISBI 2012 EM Segmentation CE-Net VInfo 0.9878 # 1
VRand 0.9743 # 1
Lung Nodule Segmentation LUNA CE-Net Accuracy 0.99 # 1
Optic Disc Segmentation Messidor CE-Net Error rate 0.051 # 1
Optic Disc Segmentation ORIGA CE-Net Error rate 0.058 # 1
Optic Disc Segmentation RIM-ONE-R1 CE-Net Error rate 0.087 # 1
Retinal Vessel Segmentation ROSE-1 DVC CE-Net Dice Score 57.83 # 5
Retinal Vessel Segmentation ROSE-1 SVC CE-Net Dice Score 75.11 # 3
Retinal Vessel Segmentation ROSE-1 SVC-DVC CE-Net Dice Score 73.00 # 4
Retinal Vessel Segmentation ROSE-2 CE-Net Dice Score 70.66 # 3
Retinal OCT Layer Segmentation Topcon CE-Net w/ Dice MAE 1.68 # 1

Methods