Constructing Information-Lossless Biological Knowledge Graphs from Conditional Statements

26 Jun 2019  ·  Tianwen Jiang, Tong Zhao, Bing Qin, Ting Liu, Nitesh V. Chawla, Meng Jiang ·

Conditions are essential in the statements of biological literature. Without the conditions (e.g., environment, equipment) that were precisely specified, the facts (e.g., observations) in the statements may no longer be valid. One biological statement has one or multiple fact(s) and/or condition(s). Their subject and object can be either a concept or a concept's attribute. Existing information extraction methods do not consider the role of condition in the biological statement nor the role of attribute in the subject/object. In this work, we design a new tag schema and propose a deep sequence tagging framework to structure conditional statement into fact and condition tuples from biological text. Experiments demonstrate that our method yields a information-lossless structure of the literature.

PDF Abstract
No code implementations yet. Submit your code now

Datasets


  Add Datasets introduced or used in this paper

Results from the Paper


  Submit results from this paper to get state-of-the-art GitHub badges and help the community compare results to other papers.

Methods


No methods listed for this paper. Add relevant methods here