Federated pretraining and fine tuning of BERT using clinical notes from multiple silos

20 Feb 2020 · Dianbo Liu, Tim Miller ·

Large scale contextual representation models, such as BERT, have significantly advanced natural language processing (NLP) in recently years. However, in certain area like healthcare, accessing diverse large scale text data from multiple institutions is extremely challenging due to privacy and regulatory reasons. In this article, we show that it is possible to both pretrain and fine tune BERT models in a federated manner using clinical texts from different silos without moving the data.

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Adam • Attention Dropout • BERT • Dense Connections • Dropout • GELU • Layer Normalization • Linear Layer • Linear Warmup With Linear Decay • Multi-Head Attention • Residual Connection • Scaled Dot-Product Attention • Softmax • Weight Decay • WordPiece

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Federated pretraining and fine tuning of BERT using clinical notes from multiple silos

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