Long-Tailed Classification of Thorax Diseases on Chest X-Ray: A New Benchmark Study

29 Aug 2022  ยท  Gregory Holste, Song Wang, Ziyu Jiang, Thomas C. Shen, George Shih, Ronald M. Summers, Yifan Peng, Zhangyang Wang ยท

Imaging exams, such as chest radiography, will yield a small set of common findings and a much larger set of uncommon findings. While a trained radiologist can learn the visual presentation of rare conditions by studying a few representative examples, teaching a machine to learn from such a "long-tailed" distribution is much more difficult, as standard methods would be easily biased toward the most frequent classes. In this paper, we present a comprehensive benchmark study of the long-tailed learning problem in the specific domain of thorax diseases on chest X-rays. We focus on learning from naturally distributed chest X-ray data, optimizing classification accuracy over not only the common "head" classes, but also the rare yet critical "tail" classes. To accomplish this, we introduce a challenging new long-tailed chest X-ray benchmark to facilitate research on developing long-tailed learning methods for medical image classification. The benchmark consists of two chest X-ray datasets for 19- and 20-way thorax disease classification, containing classes with as many as 53,000 and as few as 7 labeled training images. We evaluate both standard and state-of-the-art long-tailed learning methods on this new benchmark, analyzing which aspects of these methods are most beneficial for long-tailed medical image classification and summarizing insights for future algorithm design. The datasets, trained models, and code are available at https://github.com/VITA-Group/LongTailCXR.

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Datasets


Introduced in the Paper:

MIMIC-CXR-LT NIH-CXR-LT

Used in the Paper:

ImageNet ChestX-ray14

Results from the Paper


Task Dataset Model Metric Name Metric Value Global Rank Result Benchmark
Long-tail Learning MIMIC-CXR-LT Decoupling (cRT) Balanced Accuracy 0.296 # 1
Long-tail Learning MIMIC-CXR-LT Softmax Balanced Accuracy 0.169 # 13
Long-tail Learning MIMIC-CXR-LT Decoupling (tau-norm) Balanced Accuracy 0.230 # 6
Long-tail Learning MIMIC-CXR-LT Balanced-MixUp Balanced Accuracy 0.168 # 14
Long-tail Learning MIMIC-CXR-LT MixUp Balanced Accuracy 0.176 # 11
Long-tail Learning MIMIC-CXR-LT Reweighted LDAM-DRW Balanced Accuracy 0.275 # 2
Long-tail Learning MIMIC-CXR-LT Reweighted LDAM Balanced Accuracy 0.243 # 4
Long-tail Learning MIMIC-CXR-LT Class-balanced LDAM-DRW Balanced Accuracy 0.267 # 3
Long-tail Learning MIMIC-CXR-LT Class-balanced LDAM Balanced Accuracy 0.225 # 8
Long-tail Learning MIMIC-CXR-LT LDAM Balanced Accuracy 0.165 # 15
Long-tail Learning MIMIC-CXR-LT Reweighted Focal Loss Balanced Accuracy 0.239 # 5
Long-tail Learning MIMIC-CXR-LT Class-balanced Focal Loss Balanced Accuracy 0.191 # 10
Long-tail Learning MIMIC-CXR-LT Focal Loss Balanced Accuracy 0.172 # 12
Long-tail Learning MIMIC-CXR-LT Reweighted Softmax Balanced Accuracy 0.211 # 9
Long-tail Learning MIMIC-CXR-LT Class-balanced Softmax Balanced Accuracy 0.227 # 7
Long-tail Learning NIH-CXR-LT Decoupling (tau-norm) Balanced Accuracy 0.214 # 9
Long-tail Learning NIH-CXR-LT Balanced-MixUp Balanced Accuracy 0.155 # 12
Long-tail Learning NIH-CXR-LT MixUp Balanced Accuracy 0.118 # 14
Long-tail Learning NIH-CXR-LT Reweighted LDAM-DRW Balanced Accuracy 0.289 # 2
Long-tail Learning NIH-CXR-LT Reweighted LDAM Balanced Accuracy 0.279 # 4
Long-tail Learning NIH-CXR-LT Class-balanced LDAM Balanced Accuracy 0.235 # 7
Long-tail Learning NIH-CXR-LT Class-balanced LDAM-DRW Balanced Accuracy 0.281 # 3
Long-tail Learning NIH-CXR-LT LDAM Balanced Accuracy 0.178 # 11
Long-tail Learning NIH-CXR-LT Reweighted Focal Loss Balanced Accuracy 0.197 # 10
Long-tail Learning NIH-CXR-LT Class-Balanced Focal Loss Balanced Accuracy 0.232 # 8
Long-tail Learning NIH-CXR-LT Focal Loss Balanced Accuracy 0.122 # 13
Long-tail Learning NIH-CXR-LT Reweighted Softmax Balanced Accuracy 0.260 # 6
Long-tail Learning NIH-CXR-LT Class-Balanced Softmax Balanced Accuracy 0.269 # 5
Long-tail Learning NIH-CXR-LT Softmax Balanced Accuracy 0.115 # 15
Long-tail Learning NIH-CXR-LT Decoupling (cRT) Balanced Accuracy 0.294 # 1

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