Search Results for author: James C. Gee

Found 13 papers, 4 papers with code

Evidence Is All You Need: Ordering Imaging Studies via Language Model Alignment with the ACR Appropriateness Criteria

1 code implementation27 Sep 2024 Michael S. Yao, Allison Chae, Charles E. Kahn Jr., Walter R. Witschey, James C. Gee, Hersh Sagreiya, Osbert Bastani

In this study, we introduce a framework to intelligently leverage language models by recommending imaging studies for patient cases that are aligned with evidence-based guidelines.

Language Modelling

Deep Learning in Medical Image Registration: Magic or Mirage?

1 code implementation11 Aug 2024 Rohit Jena, Deeksha Sethi, Pratik Chaudhari, James C. Gee

This strong correlation hints to the fact that architectural designs in learning-based methods is unlikely to affect this correlation, and therefore, the performance of learning-based methods.

Deep Learning Image Registration +1

Deep Implicit Optimization enables Robust Learnable Features for Deformable Image Registration

no code implementations11 Jun 2024 Rohit Jena, Pratik Chaudhari, James C. Gee

By implicitly differentiating end-to-end through an iterative optimization solver, we explicitly exploit invariances of the correspondence matching problem induced by the optimization, while learning registration and label-aware features, and guaranteeing the warp functions to be a local minima of the registration objective in the feature space.

Image Registration Inductive Bias

A Textbook Remedy for Domain Shifts: Knowledge Priors for Medical Image Analysis

no code implementations23 May 2024 Yue Yang, Mona Gandhi, YuFei Wang, Yifan Wu, Michael S. Yao, Chris Callison-Burch, James C. Gee, Mark Yatskar

KnoBo uses retrieval-augmented language models to design an appropriate concept space paired with an automatic training procedure for recognizing the concept.

Medical Image Analysis

Neural Ordinary Differential Equation based Sequential Image Registration for Dynamic Characterization

no code implementations2 Apr 2024 Yifan Wu, Mengjin Dong, Rohit Jena, Chen Qin, James C. Gee

Leveraging Neural Ordinary Differential Equations (ODE) for registration, this extension work discusses how this framework can aid in the characterization of sequential biological processes.

Image Registration Medical Image Analysis

FireANTs: Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration

1 code implementation1 Apr 2024 Rohit Jena, Pratik Chaudhari, James C. Gee

We demonstrate compelling improvements on image registration across a spectrum of modalities and anatomies by measuring structural and landmark overlap of the registered image volumes.

Image Registration Riemannian optimization

Generative Adversarial Model-Based Optimization via Source Critic Regularization

1 code implementation9 Feb 2024 Michael S. Yao, Yimeng Zeng, Hamsa Bastani, Jacob Gardner, James C. Gee, Osbert Bastani

Offline model-based optimization seeks to optimize against a learned surrogate model without querying the true oracle objective function during optimization.

Bayesian Optimization Protein Design

The Role of Chain-of-Thought in Complex Vision-Language Reasoning Task

no code implementations15 Nov 2023 Yifan Wu, Pengchuan Zhang, Wenhan Xiong, Barlas Oguz, James C. Gee, Yixin Nie

The study explores the effectiveness of the Chain-of-Thought approach, known for its proficiency in language tasks by breaking them down into sub-tasks and intermediate steps, in improving vision-language tasks that demand sophisticated perception and reasoning.

Visual Reasoning

The Brain Tumor Sequence Registration (BraTS-Reg) Challenge: Establishing Correspondence Between Pre-Operative and Follow-up MRI Scans of Diffuse Glioma Patients

no code implementations13 Dec 2021 Bhakti Baheti, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey Rudie, Syed Abidi, Mina Mousa, Javier Villanueva-Meyer, Brandon K. K. Fields, Florian Kofler, Russell Takeshi Shinohara, Juan Eugenio Iglesias, Tony C. W. Mok, Albert C. S. Chung, Marek Wodzinski, Artur Jurgas, Niccolo Marini, Manfredo Atzori, Henning Muller, Christoph Grobroehmer, Hanna Siebert, Lasse Hansen, Mattias P. Heinrich, Luca Canalini, Jan Klein, Annika Gerken, Stefan Heldmann, Alessa Hering, Horst K. Hahn, Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim, Ramy A. Zeineldin, Mohamed E. Karar, Franziska Mathis-Ullrich, Oliver Burgert, Javid Abderezaei, Aymeric Pionteck, Agamdeep Chopra, Mehmet Kurt, Kewei Yan, Yonghong Yan, Zhe Tang, Jianqiang Ma, Sahar Almahfouz Nasser, Nikhil Cherian Kurian, Mohit Meena, Saqib Shamsi, Amit Sethi, Nicholas J. Tustison, Brian B. Avants, Philip Cook, James C. Gee, Lin Tian, Hastings Greer, Marc Niethammer, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Stergios Christodoulidis, Theo Estiene, Maria Vakalopoulou, Nikos Paragios, Daniel S. Marcus, Christos Davatzikos, Aristeidis Sotiras, Bjoern Menze, Spyridon Bakas, Diana Waldmannstetter

Registration of longitudinal brain MRI scans containing pathologies is challenging due to dramatic changes in tissue appearance.

Descriptive Image Registration +1

NODEO: A Neural Ordinary Differential Equation Based Optimization Framework for Deformable Image Registration

no code implementations CVPR 2022 Yifan Wu, Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, M. Ani Hsieh, James C. Gee

Deformable image registration (DIR), aiming to find spatial correspondence between images, is one of the most critical problems in the domain of medical image analysis.

Image Registration Medical Image Analysis

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