no code implementations • 14 Nov 2024 • Soumick Chatterjee, Hendrik Mattern, Marc Dörner, Alessandro Sciarra, Florian Dubost, Hannes Schnurre, Rupali Khatun, Chun-Chih Yu, Tsung-Lin Hsieh, Yi-Shan Tsai, Yi-Zeng Fang, Yung-Ching Yang, Juinn-Dar Huang, Marshall Xu, Siyu Liu, Fernanda L. Ribeiro, Saskia Bollmann, Karthikesh Varma Chintalapati, Chethan Mysuru Radhakrishna, Sri Chandana Hudukula Ram Kumara, Raviteja Sutrave, Abdul Qayyum, Moona Mazher, Imran Razzak, Cristobal Rodero, Steven Niederren, Fengming Lin, Yan Xia, Jiacheng Wang, Riyu Qiu, Liansheng Wang, Arya Yazdan Panah, Rosana El Jurdi, Guanghui Fu, Janan Arslan, Ghislain Vaillant, Romain Valabregue, Didier Dormont, Bruno Stankoff, Olivier Colliot, Luisa Vargas, Isai Daniel Chacón, Ioannis Pitsiorlas, Pablo Arbeláez, Maria A. Zuluaga, Stefanie Schreiber, Oliver Speck, Andreas Nürnberger
The human brain receives nutrients and oxygen through an intricate network of blood vessels.
no code implementations • 23 Sep 2024 • Abdul Qayyum, Moona Mazher Imran Razzak, Steven A Niederer
Computer aided pathological analysis has been the gold standard for tumor diagnosis, however domain shift is a significant problem in histopathology.
no code implementations • 2 Sep 2024 • Adrito Das, Danyal Z. Khan, Dimitrios Psychogyios, Yitong Zhang, John G. Hanrahan, Francisco Vasconcelos, You Pang, Zhen Chen, Jinlin Wu, Xiaoyang Zou, Guoyan Zheng, Abdul Qayyum, Moona Mazher, Imran Razzak, Tianbin Li, Jin Ye, Junjun He, Szymon Płotka, Joanna Kaleta, Amine Yamlahi, Antoine Jund, Patrick Godau, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Dominik Rivoir, Alejandra Pérez, Santiago Rodriguez, Pablo Arbeláez, Danail Stoyanov, Hani J. Marcus, Sophia Bano
The field of computer vision applied to videos of minimally invasive surgery is ever-growing.
no code implementations • 22 Jul 2024 • Syed Javed, Tariq M. Khan, Abdul Qayyum, Arcot Sowmya, Imran Razzak
In this work, we present a lightweight retinal vessel segmentation network based on the encoder-decoder mechanism with region-guided attention.
no code implementations • 9 Jun 2024 • Abdul Qayyum, Hao Xu, Brian P. Halliday, Cristobal Rodero, Christopher W. Lanyon, Richard D. Wilkinson, Steven Alexander Niederer
Accurate segmentation of the ventricles and atria in 4CH views is crucial for analyzing heart health and reconstructing four-chamber meshes, which are essential for estimating various parameters to assess overall heart condition.
no code implementations • 27 May 2024 • Syed Javed, Tariq M. Khan, Abdul Qayyum, Hamid Alinejad-Rokny, Arcot Sowmya, Imran Razzak
Accurate segmentation of anatomical structures and abnormalities in medical images is crucial for computer-aided diagnosis and analysis.
no code implementations • 27 May 2024 • Abdul Qayyum, Moona Mazher, Angela Lee, Jose A Solis-Lemus, Imran Razzak, Steven A Niederer
Unlike Right Atrium (RA), Left Atrium (LA) presents distinctive challenges, including much thinner myocardial walls, complex and irregular morphology, as well as diversity in individual's structure, making off-the-shelf methods designed for the Left Ventricle (LV) may not work in the context of the left atrium.
2 code implementations • 28 Mar 2024 • Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew, Alexandre Hutton, Roland Wiest, Johannes Kaesmacher, Uta Hanning, Arsany Hakim, Richard Zubal, Waldo Valenzuela, David Robben, Diana M. Sima, Vincenzo Anania, Arne Brys, James A. Meakin, Anne Mickan, Gabriel Broocks, Christian Heitkamp, Shengbo Gao, Kongming Liang, Ziji Zhang, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Pooya Ashtari, Sabine Van Huffel, Hyun-su Jeong, Chi-ho Yoon, Chulhong Kim, Jiayu Huo, Sebastien Ourselin, Rachel Sparks, Albert Clèrigues, Arnau Oliver, Xavier Lladó, Liam Chalcroft, Ioannis Pappas, Jeroen Bertels, Ewout Heylen, Juliette Moreau, Nima Hatami, Carole Frindel, Abdul Qayyum, Moona Mazher, Domenec Puig, Shao-Chieh Lin, Chun-Jung Juan, Tianxi Hu, Lyndon Boone, Maged Goubran, Yi-Jui Liu, Susanne Wegener, Florian Kofler, Ivan Ezhov, Suprosanna Shit, Moritz R. Hernandez Petzsche, Bjoern Menze, Jan S. Kirschke, Benedikt Wiestler
We address this gap by presenting a novel ensemble algorithm derived from the 2022 Ischemic Stroke Lesion Segmentation (ISLES) challenge.
no code implementations • 8 Feb 2024 • Kelly Payette, Céline Steger, Roxane Licandro, Priscille de Dumast, Hongwei Bran Li, Matthew Barkovich, Liu Li, Maik Dannecker, Chen Chen, Cheng Ouyang, Niccolò McConnell, Alina Miron, Yongmin Li, Alena Uus, Irina Grigorescu, Paula Ramirez Gilliland, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Haoyu Wang, Ziyan Huang, Jin Ye, Mireia Alenyà, Valentin Comte, Oscar Camara, Jean-Baptiste Masson, Astrid Nilsson, Charlotte Godard, Moona Mazher, Abdul Qayyum, Yibo Gao, Hangqi Zhou, Shangqi Gao, Jia Fu, Guiming Dong, Guotai Wang, ZunHyan Rieu, HyeonSik Yang, Minwoo Lee, Szymon Płotka, Michal K. Grzeszczyk, Arkadiusz Sitek, Luisa Vargas Daza, Santiago Usma, Pablo Arbelaez, Wenying Lu, WenHao Zhang, Jing Liang, Romain Valabregue, Anand A. Joshi, Krishna N. Nayak, Richard M. Leahy, Luca Wilhelmi, Aline Dändliker, Hui Ji, Antonio G. Gennari, Anton Jakovčić, Melita Klaić, Ana Adžić, Pavel Marković, Gracia Grabarić, Gregor Kasprian, Gregor Dovjak, Milan Rados, Lana Vasung, Meritxell Bach Cuadra, Andras Jakab
The FeTA Challenge 2022 was able to successfully evaluate and advance generalizability of multi-class fetal brain tissue segmentation algorithms for MRI and it continues to benchmark new algorithms.
1 code implementation • 21 Dec 2023 • Yang Nan, Xiaodan Xing, Shiyi Wang, Zeyu Tang, Federico N Felder, Sheng Zhang, Roberta Eufrasia Ledda, Xiaoliu Ding, Ruiqi Yu, Weiping Liu, Feng Shi, Tianyang Sun, Zehong Cao, Minghui Zhang, Yun Gu, Hanxiao Zhang, Jian Gao, Pingyu Wang, Wen Tang, Pengxin Yu, Han Kang, Junqiang Chen, Xing Lu, Boyu Zhang, Michail Mamalakis, Francesco Prinzi, Gianluca Carlini, Lisa Cuneo, Abhirup Banerjee, Zhaohu Xing, Lei Zhu, Zacharia Mesbah, Dhruv Jain, Tsiry Mayet, Hongyu Yuan, Qing Lyu, Abdul Qayyum, Moona Mazher, Athol Wells, Simon LF Walsh, Guang Yang
The online validation set incorporated 52 HRCT scans from patients with fibrotic lung disease and the offline test set included 140 cases from fibrosis and COVID-19 patients.
1 code implementation • 10 Mar 2023 • Minghui Zhang, Yangqian Wu, Hanxiao Zhang, Yulei Qin, Hao Zheng, Wen Tang, Corey Arnold, Chenhao Pei, Pengxin Yu, Yang Nan, Guang Yang, Simon Walsh, Dominic C. Marshall, Matthieu Komorowski, Puyang Wang, Dazhou Guo, Dakai Jin, Ya'nan Wu, Shuiqing Zhao, Runsheng Chang, Boyu Zhang, Xing Lv, Abdul Qayyum, Moona Mazher, Qi Su, Yonghuang Wu, Ying'ao Liu, Yufei Zhu, Jiancheng Yang, Ashkan Pakzad, Bojidar Rangelov, Raul San Jose Estepar, Carlos Cano Espinosa, Jiayuan Sun, Guang-Zhong Yang, Yun Gu
In recent years, new methods have extended the reach of pulmonary airway segmentation that is closer to the limit of image resolution.
1 code implementation • 3 Feb 2023 • Coen de Vente, Koenraad A. Vermeer, Nicolas Jaccard, He Wang, Hongyi Sun, Firas Khader, Daniel Truhn, Temirgali Aimyshev, Yerkebulan Zhanibekuly, Tien-Dung Le, Adrian Galdran, Miguel Ángel González Ballester, Gustavo Carneiro, Devika R G, Hrishikesh P S, Densen Puthussery, Hong Liu, Zekang Yang, Satoshi Kondo, Satoshi Kasai, Edward Wang, Ashritha Durvasula, Jónathan Heras, Miguel Ángel Zapata, Teresa Araújo, Guilherme Aresta, Hrvoje Bogunović, Mustafa Arikan, Yeong Chan Lee, Hyun Bin Cho, Yoon Ho Choi, Abdul Qayyum, Imran Razzak, Bram van Ginneken, Hans G. Lemij, Clara I. Sánchez
Artificial intelligence (AI) can be used to analyze color fundus photographs (CFPs) in a cost-effective manner, making glaucoma screening more accessible.
no code implementations • 9 Jan 2023 • Xiangyu Li, Gongning Luo, Kuanquan Wang, Hongyu Wang, Jun Liu, Xinjie Liang, Jie Jiang, Zhenghao Song, Chunyue Zheng, Haokai Chi, Mingwang Xu, Yingte He, Xinghua Ma, Jingwen Guo, Yifan Liu, Chuanpu Li, Zeli Chen, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Antoine P. Sanner, Anirban Mukhopadhyay, Ahmed E. Othman, Xingyu Zhao, Weiping Liu, Jinhuang Zhang, Xiangyuan Ma, Qinghui Liu, Bradley J. MacIntosh, Wei Liang, Moona Mazher, Abdul Qayyum, Valeriia Abramova, Xavier Lladó, Shuo Li
It is intended to resolve the above-mentioned problems and promote the development of both intracranial hemorrhage segmentation and anisotropic data processing.
no code implementations • 16 Dec 2022 • Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Patrick Godau, Veronika Cheplygina, Michal Kozubek, Sharib Ali, Anubha Gupta, Jan Kybic, Alison Noble, Carlos Ortiz de Solórzano, Samiksha Pachade, Caroline Petitjean, Daniel Sage, Donglai Wei, Elizabeth Wilden, Deepak Alapatt, Vincent Andrearczyk, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Vivek Singh Bawa, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Jinwook Choi, Olivier Commowick, Marie Daum, Adrien Depeursinge, Reuben Dorent, Jan Egger, Hannah Eichhorn, Sandy Engelhardt, Melanie Ganz, Gabriel Girard, Lasse Hansen, Mattias Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Hyunjeong Kim, Bennett Landman, Hongwei Bran Li, Jianning Li, Jun Ma, Anne Martel, Carlos Martín-Isla, Bjoern Menze, Chinedu Innocent Nwoye, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Carole Sudre, Kimberlin Van Wijnen, Armine Vardazaryan, Tom Vercauteren, Martin Wagner, Chuanbo Wang, Moi Hoon Yap, Zeyun Yu, Chun Yuan, Maximilian Zenk, Aneeq Zia, David Zimmerer, Rina Bao, Chanyeol Choi, Andrew Cohen, Oleh Dzyubachyk, Adrian Galdran, Tianyuan Gan, Tianqi Guo, Pradyumna Gupta, Mahmood Haithami, Edward Ho, Ikbeom Jang, Zhili Li, Zhengbo Luo, Filip Lux, Sokratis Makrogiannis, Dominik Müller, Young-tack Oh, Subeen Pang, Constantin Pape, Gorkem Polat, Charlotte Rosalie Reed, Kanghyun Ryu, Tim Scherr, Vajira Thambawita, Haoyu Wang, Xinliang Wang, Kele Xu, Hung Yeh, Doyeob Yeo, Yixuan Yuan, Yan Zeng, Xin Zhao, Julian Abbing, Jannes Adam, Nagesh Adluru, Niklas Agethen, Salman Ahmed, Yasmina Al Khalil, Mireia Alenyà, Esa Alhoniemi, Chengyang An, Talha Anwar, Tewodros Weldebirhan Arega, Netanell Avisdris, Dogu Baran Aydogan, Yingbin Bai, Maria Baldeon Calisto, Berke Doga Basaran, Marcel Beetz, Cheng Bian, Hao Bian, Kevin Blansit, Louise Bloch, Robert Bohnsack, Sara Bosticardo, Jack Breen, Mikael Brudfors, Raphael Brüngel, Mariano Cabezas, Alberto Cacciola, Zhiwei Chen, Yucong Chen, Daniel Tianming Chen, Minjeong Cho, Min-Kook Choi, Chuantao Xie Chuantao Xie, Dana Cobzas, Julien Cohen-Adad, Jorge Corral Acero, Sujit Kumar Das, Marcela de Oliveira, Hanqiu Deng, Guiming Dong, Lars Doorenbos, Cory Efird, Sergio Escalera, Di Fan, Mehdi Fatan Serj, Alexandre Fenneteau, Lucas Fidon, Patryk Filipiak, René Finzel, Nuno R. Freitas, Christoph M. Friedrich, Mitchell Fulton, Finn Gaida, Francesco Galati, Christoforos Galazis, Chang Hee Gan, Zheyao Gao, Shengbo Gao, Matej Gazda, Beerend Gerats, Neil Getty, Adam Gibicar, Ryan Gifford, Sajan Gohil, Maria Grammatikopoulou, Daniel Grzech, Orhun Güley, Timo Günnemann, Chunxu Guo, Sylvain Guy, Heonjin Ha, Luyi Han, Il Song Han, Ali Hatamizadeh, Tian He, Jimin Heo, Sebastian Hitziger, SeulGi Hong, Seungbum Hong, Rian Huang, Ziyan Huang, Markus Huellebrand, Stephan Huschauer, Mustaffa Hussain, Tomoo Inubushi, Ece Isik Polat, Mojtaba Jafaritadi, SeongHun Jeong, Bailiang Jian, Yuanhong Jiang, Zhifan Jiang, Yueming Jin, Smriti Joshi, Abdolrahim Kadkhodamohammadi, Reda Abdellah Kamraoui, Inha Kang, Junghwa Kang, Davood Karimi, April Khademi, Muhammad Irfan Khan, Suleiman A. Khan, Rishab Khantwal, Kwang-Ju Kim, Timothy Kline, Satoshi Kondo, Elina Kontio, Adrian Krenzer, Artem Kroviakov, Hugo Kuijf, Satyadwyoom Kumar, Francesco La Rosa, Abhi Lad, Doohee Lee, Minho Lee, Chiara Lena, Hao Li, Ling Li, Xingyu Li, Fuyuan Liao, Kuanlun Liao, Arlindo Limede Oliveira, Chaonan Lin, Shan Lin, Akis Linardos, Marius George Linguraru, Han Liu, Tao Liu, Di Liu, Yanling Liu, João Lourenço-Silva, Jingpei Lu, Jiangshan Lu, Imanol Luengo, Christina B. Lund, Huan Minh Luu, Yi Lv, Uzay Macar, Leon Maechler, Sina Mansour L., Kenji Marshall, Moona Mazher, Richard McKinley, Alfonso Medela, Felix Meissen, Mingyuan Meng, Dylan Miller, Seyed Hossein Mirjahanmardi, Arnab Mishra, Samir Mitha, Hassan Mohy-ud-Din, Tony Chi Wing Mok, Gowtham Krishnan Murugesan, Enamundram Naga Karthik, Sahil Nalawade, Jakub Nalepa, Mohamed Naser, Ramin Nateghi, Hammad Naveed, Quang-Minh Nguyen, Cuong Nguyen Quoc, Brennan Nichyporuk, Bruno Oliveira, David Owen, Jimut Bahan Pal, Junwen Pan, Wentao Pan, Winnie Pang, Bogyu Park, Vivek Pawar, Kamlesh Pawar, Michael Peven, Lena Philipp, Tomasz Pieciak, Szymon Plotka, Marcel Plutat, Fattaneh Pourakpour, Domen Preložnik, Kumaradevan Punithakumar, Abdul Qayyum, Sandro Queirós, Arman Rahmim, Salar Razavi, Jintao Ren, Mina Rezaei, Jonathan Adam Rico, ZunHyan Rieu, Markus Rink, Johannes Roth, Yusely Ruiz-Gonzalez, Numan Saeed, Anindo Saha, Mostafa Salem, Ricardo Sanchez-Matilla, Kurt Schilling, Wei Shao, Zhiqiang Shen, Ruize Shi, Pengcheng Shi, Daniel Sobotka, Théodore Soulier, Bella Specktor Fadida, Danail Stoyanov, Timothy Sum Hon Mun, Xiaowu Sun, Rong Tao, Franz Thaler, Antoine Théberge, Felix Thielke, Helena Torres, Kareem A. Wahid, Jiacheng Wang, Yifei Wang, Wei Wang, Xiong Wang, Jianhui Wen, Ning Wen, Marek Wodzinski, Ye Wu, Fangfang Xia, Tianqi Xiang, Chen Xiaofei, Lizhan Xu, Tingting Xue, Yuxuan Yang, Lin Yang, Kai Yao, Huifeng Yao, Amirsaeed Yazdani, Michael Yip, Hwanseung Yoo, Fereshteh Yousefirizi, Shunkai Yu, Lei Yu, Jonathan Zamora, Ramy Ashraf Zeineldin, Dewen Zeng, Jianpeng Zhang, Bokai Zhang, Jiapeng Zhang, Fan Zhang, Huahong Zhang, Zhongchen Zhao, Zixuan Zhao, Jiachen Zhao, Can Zhao, Qingshuo Zheng, Yuheng Zhi, Ziqi Zhou, Baosheng Zou, Klaus Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein
Of these, 84% were based on standard architectures.
1 code implementation • 24 Jun 2022 • Sophia Bano, Alessandro Casella, Francisco Vasconcelos, Abdul Qayyum, Abdesslam Benzinou, Moona Mazher, Fabrice Meriaudeau, Chiara Lena, Ilaria Anita Cintorrino, Gaia Romana De Paolis, Jessica Biagioli, Daria Grechishnikova, Jing Jiao, Bizhe Bai, Yanyan Qiao, Binod Bhattarai, Rebati Raman Gaire, Ronast Subedi, Eduard Vazquez, Szymon Płotka, Aneta Lisowska, Arkadiusz Sitek, George Attilakos, Ruwan Wimalasundera, Anna L David, Dario Paladini, Jan Deprest, Elena De Momi, Leonardo S Mattos, Sara Moccia, Danail Stoyanov
For this challenge, we released a dataset of 2060 images, pixel-annotated for vessels, tool, fetus and background classes, from 18 in-vivo TTTS fetoscopy procedures and 18 short video clips.
no code implementations • 20 Apr 2022 • Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Li Xuesong, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, Kuanlun Liao, Yixuan Wu, Jintai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern Menze, Meritxell Bach Cuadra, Andras Jakab
Automatic segmentation of the developing fetal brain is a vital step in the quantitative analysis of prenatal neurodevelopment both in the research and clinical context.
no code implementations • 9 Aug 2021 • Alain Lalande, Zhihao Chen, Thibaut Pommier, Thomas Decourselle, Abdul Qayyum, Michel Salomon, Dominique Ginhac, Youssef Skandarani, Arnaud Boucher, Khawla Brahim, Marleen de Bruijne, Robin Camarasa, Teresa M. Correia, Xue Feng, Kibrom B. Girum, Anja Hennemuth, Markus Huellebrand, Raabid Hussain, Matthias Ivantsits, Jun Ma, Craig Meyer, Rishabh Sharma, Jixi Shi, Nikolaos V. Tsekos, Marta Varela, Xiyue Wang, Sen yang, Hannu Zhang, Yichi Zhang, Yuncheng Zhou, Xiahai Zhuang, Raphael Couturier, Fabrice Meriaudeau
The publicly available database consists of 150 exams divided into 50 cases with normal MRI after injection of a contrast agent and 100 cases with myocardial infarction (and then with a hyperenhanced area on DE-MRI), whatever their inclusion in the cardiac emergency department.
no code implementations • MIDL 2019 • Abdul Qayyum, Alain Lalande, Thomas Decourselle, Thibaut Pommier, Alexandre Cochet, Fabrice Meriaudeau
The proposed model could be used for the automatic segmentation of myocardial border that is a very important step for accurate quantification of no-reflow, myocardial infarction, myocarditis, and hypertrophic cardiomyopathy, among others.