1 code implementation • 6 Nov 2024 • Pedro R. A. S. Bassi, Wenxuan Li, Yucheng Tang, Fabian Isensee, Zifu Wang, Jieneng Chen, Yu-Cheng Chou, Yannick Kirchhoff, Maximilian Rokuss, Ziyan Huang, Jin Ye, Junjun He, Tassilo Wald, Constantin Ulrich, Michael Baumgartner, Saikat Roy, Klaus H. Maier-Hein, Paul Jaeger, Yiwen Ye, Yutong Xie, Jianpeng Zhang, Ziyang Chen, Yong Xia, Zhaohu Xing, Lei Zhu, Yousef Sadegheih, Afshin Bozorgpour, Pratibha Kumari, Reza Azad, Dorit Merhof, Pengcheng Shi, Ting Ma, Yuxin Du, Fan Bai, Tiejun Huang, Bo Zhao, Haonan Wang, Xiaomeng Li, Hanxue Gu, Haoyu Dong, Jichen Yang, Maciej A. Mazurowski, Saumya Gupta, Linshan Wu, Jiaxin Zhuang, Hao Chen, Holger Roth, Daguang Xu, Matthew B. Blaschko, Sergio Decherchi, Andrea Cavalli, Alan L. Yuille, Zongwei Zhou
We are committed to expanding this benchmark to encourage more innovation of AI algorithms for the medical domain.
1 code implementation • 31 Jul 2024 • Sina Ghorbani Kolahi, Seyed Kamal Chaharsooghi, Toktam Khatibi, Afshin Bozorgpour, Reza Azad, Moein Heidari, Ilker Hacihaliloglu, Dorit Merhof
Medical image segmentation involves identifying and separating object instances in a medical image to delineate various tissues and structures, a task complicated by the significant variations in size, shape, and density of these features.
no code implementations • 15 Jul 2024 • Dennis Hein, Afshin Bozorgpour, Dorit Merhof, Ge Wang
Physics-inspired Generative Models (GMs), in particular Diffusion Models (DMs) and Poisson Flow Models (PFMs), enhance Bayesian methods and promise great utility in medical imaging.
1 code implementation • 5 Jun 2024 • Moein Heidari, Sina Ghorbani Kolahi, Sanaz Karimijafarbigloo, Bobby Azad, Afshin Bozorgpour, Soheila Hatami, Reza Azad, Ali Diba, Ulas Bagci, Dorit Merhof, Ilker Hacihaliloglu
State Space Models (SSMs), specifically the \textit{\textbf{Mamba}} model with selection mechanisms and hardware-aware architecture, have garnered immense interest lately in sequential modeling and visual representation learning, challenging the dominance of transformers by providing infinite context lengths and offering substantial efficiency maintaining linear complexity in the input sequence.
1 code implementation • 7 Apr 2024 • Yousef Sadegheih, Afshin Bozorgpour, Pratibha Kumari, Reza Azad, Dorit Merhof
The rise of Transformer architectures has revolutionized medical image segmentation, leading to hybrid models that combine Convolutional Neural Networks (CNNs) and Transformers for enhanced accuracy.
no code implementations • 28 Mar 2024 • Moein Heidari, Reza Azad, Sina Ghorbani Kolahi, René Arimond, Leon Niggemeier, Alaa Sulaiman, Afshin Bozorgpour, Ehsan Khodapanah Aghdam, Amirhossein Kazerouni, Ilker Hacihaliloglu, Dorit Merhof
Intrigued by the inherent ability of the human visual system to identify salient regions in complex scenes, attention mechanisms have been seamlessly integrated into various Computer Vision (CV) tasks.
no code implementations • 28 Dec 2023 • Pratibha Kumari, Joohi Chauhan, Afshin Bozorgpour, Boqiang Huang, Reza Azad, Dorit Merhof
Medical imaging analysis has witnessed remarkable advancements even surpassing human-level performance in recent years, driven by the rapid development of advanced deep-learning algorithms.
1 code implementation • 21 Nov 2023 • Afshin Bozorgpour, Bobby Azad, Reza Azad, Yury Velichko, Ulas Bagci, Dorit Merhof
In addition, we introduce a skeletal loss term to reinforce the model's geometric dependence on the spine.
1 code implementation • 28 Oct 2023 • Bobby Azad, Reza Azad, Sania Eskandari, Afshin Bozorgpour, Amirhossein Kazerouni, Islem Rekik, Dorit Merhof
Foundation models, large-scale, pre-trained deep-learning models adapted to a wide range of downstream tasks have gained significant interest lately in various deep-learning problems undergoing a paradigm shift with the rise of these models.
2 code implementations • 25 Aug 2023 • Reza Azad, Amirhossein Kazerouni, Alaa Sulaiman, Afshin Bozorgpour, Ehsan Khodapanah Aghdam, Abin Jose, Dorit Merhof
Furthermore, to intensify the importance of the boundary information, we impose an additional attention map by creating a Gaussian pyramid on top of the HF components.
1 code implementation • 5 Aug 2023 • Afshin Bozorgpour, Yousef Sadegheih, Amirhossein Kazerouni, Reza Azad, Dorit Merhof
Skin lesion segmentation plays a critical role in the early detection and accurate diagnosis of dermatological conditions.
Ranked #1 on Lesion Segmentation on HAM10000
1 code implementation • 27 Nov 2022 • Reza Azad, Ehsan Khodapanah Aghdam, Amelie Rauland, Yiwei Jia, Atlas Haddadi Avval, Afshin Bozorgpour, Sanaz Karimijafarbigloo, Joseph Paul Cohen, Ehsan Adeli, Dorit Merhof
U-Net is the most widespread image segmentation architecture due to its flexibility, optimized modular design, and success in all medical image modalities.
1 code implementation • MICCAI Workshop COMPAY 2021 • Afshin Bozorgpour, Reza Azad, Eman Showkatian, Alaa Sulaiman
On top of the cytoplasm segmentation network, we included a scale aggregation function to refine and generate a final prediction.