1 code implementation • 21 Oct 2024 • Mehdi Yazdani-Jahromi, Ali Khodabandeh Yalabadi, Amirarsalan Rajabi, Aida Tayebi, Ivan Garibay, Ozlem Ozmen Garibay
The persistent challenge of bias in machine learning models necessitates robust solutions to ensure parity and equal treatment across diverse groups, particularly in classification tasks.
1 code implementation • 4 Nov 2023 • Ali Khodabandeh Yalabadi, Mehdi Yazdani-Jahromi, Niloofar Yousefi, Aida Tayebi, Sina Abdidizaji, Ozlem Ozmen Garibay
Drug-Target Interaction (DTI) prediction is vital for drug discovery, yet challenges persist in achieving model interpretability and optimizing performance.
1 code implementation • Briefings in Bioinformatics 2022 • Mehdi Yazdani-Jahromi, Niloofar Yousefi, Aida Tayebi, Elayaraja Kolanthai, Craig J Neal, Sudipta Seal, Ozlem Ozmen Garibay
In this study, we introduce an interpretable graph-based deep learning prediction model, AttentionSiteDTI, which utilizes protein binding sites along with a self-attention mechanism to address the problem of drug–target interaction prediction.
Ranked #1 on Drug Discovery on BindingDB
1 code implementation • 15 Mar 2022 • Mehdi Yazdani-Jahromi, Amirarsalan Rajabi, Ali Khodabandeh Yalabadi, Aida Tayebi, Ozlem Ozmen Garibay
There is an abundance of evidence suggesting that these models could contain or even amplify the bias present in the data on which they are trained, inherent to their objective function and learning algorithms; Many researchers direct their attention to this issue in different directions, namely, changing data to be statistically independent, adversarial training for restricting the capabilities of a particular competitor who aims to maximize parity, etc.
1 code implementation • 19 Aug 2020 • Ece Çiğdem Mutlu, Toktam A. Oghaz, Jasser Jasser, Ege Tütüncüler, Amirarsalan Rajabi, Aida Tayebi, Ozlem Ozmen, Ivan Garibay
We expect this data set to be useful for many research purposes, including stance detection, evolution and dynamics of opinions regarding this outbreak, and changes in opinions in response to the exogenous shocks such as policy decisions and events.