no code implementations • 10 Nov 2022 • Ziyi He, Albert C. S. Chung
Template generation is a critical step in groupwise image registration, which involves aligning a group of subjects into a common space.
no code implementations • 20 Oct 2022 • Tony C. W. Mok, Albert C. S. Chung
Registration of pre-operative and follow-up brain MRI scans is challenging due to the large variation of tissue appearance and missing correspondences in tumour recurrence regions caused by tumour mass effect.
1 code implementation • 8 Jun 2022 • Tony C. W. Mok, Albert C. S. Chung
Registration of pre-operative and post-recurrence brain images is often needed to evaluate the effectiveness of brain gliomas treatment.
1 code implementation • CVPR 2022 • Tony C. W. Mok, Albert C. S. Chung
Comprehensive results demonstrate that our method is superior to the existing CNNs-based affine registration methods in terms of registration accuracy, robustness and generalizability while preserving the runtime advantage of the learning-based methods.
no code implementations • 13 Dec 2021 • Bhakti Baheti, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey Rudie, Syed Abidi, Mina Mousa, Javier Villanueva-Meyer, Brandon K. K. Fields, Florian Kofler, Russell Takeshi Shinohara, Juan Eugenio Iglesias, Tony C. W. Mok, Albert C. S. Chung, Marek Wodzinski, Artur Jurgas, Niccolo Marini, Manfredo Atzori, Henning Muller, Christoph Grobroehmer, Hanna Siebert, Lasse Hansen, Mattias P. Heinrich, Luca Canalini, Jan Klein, Annika Gerken, Stefan Heldmann, Alessa Hering, Horst K. Hahn, Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim, Ramy A. Zeineldin, Mohamed E. Karar, Franziska Mathis-Ullrich, Oliver Burgert, Javid Abderezaei, Aymeric Pionteck, Agamdeep Chopra, Mehmet Kurt, Kewei Yan, Yonghong Yan, Zhe Tang, Jianqiang Ma, Sahar Almahfouz Nasser, Nikhil Cherian Kurian, Mohit Meena, Saqib Shamsi, Amit Sethi, Nicholas J. Tustison, Brian B. Avants, Philip Cook, James C. Gee, Lin Tian, Hastings Greer, Marc Niethammer, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Stergios Christodoulidis, Theo Estiene, Maria Vakalopoulou, Nikos Paragios, Daniel S. Marcus, Christos Davatzikos, Aristeidis Sotiras, Bjoern Menze, Spyridon Bakas, Diana Waldmannstetter
Registration of longitudinal brain MRI scans containing pathologies is challenging due to dramatic changes in tissue appearance.
no code implementations • 8 Dec 2021 • Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Pew-Thian Yap, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Jens Sjölund, Daniel Grzech, Huaqi Qiu, Zeju Li, Alexander Thorley, Jinming Duan, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett Landman, Yuankai Huo, Keelin Murphy, Nikolas Lessmann, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich
Image registration is a fundamental medical image analysis task, and a wide variety of approaches have been proposed.
3 code implementations • 23 Jun 2021 • Tony C. W. Mok, Albert C. S. Chung
In this paper, we propose a conditional image registration method and a new self-supervised learning paradigm for deep deformable image registration.
no code implementations • 6 Sep 2020 • Yongxiang Huang, Albert C. S. Chung
There is a rising need for computational models that can complementarily leverage data of different modalities while investigating associations between subjects for population-based disease analysis.
3 code implementations • 29 Jun 2020 • Tony C. W. Mok, Albert C. S. Chung
Deep learning-based methods have recently demonstrated promising results in deformable image registration for a wide range of medical image analysis tasks.
1 code implementation • CVPR 2020 • Tony C. W. Mok, Albert C. S. Chung
However, these approaches often ignore the topology preservation of the transformation and the smoothness of the transformation which is enforced by a global smoothing energy function alone.
no code implementations • 16 Sep 2019 • Yongxiang Huang, Albert C. S. Chung
Despite deep convolutional neural networks boost the performance of image classification and segmentation in digital pathology analysis, they are usually weak in interpretability for clinical applications or require heavy annotations to achieve object localization.
no code implementations • 29 Jul 2019 • Rongzhao Zhang, Albert C. S. Chung
In this work, we attempt to address the pixel-wise error map prediction problem and the per-case mask quality assessment problem using a unified deep learning (DL) framework.
1 code implementation • 31 Aug 2018 • Rongzhao Zhang, Han Zhang, Albert C. S. Chung
In this work, we present a unified mammogram analysis framework for both whole-mammogram classification and segmentation.
no code implementations • 6 Jun 2018 • Yishuo Zhang, Albert C. S. Chung
In this way, the network will pay more attention to the boundary areas of vessels and achieve a better performance, especially in tiny vessels detecting.
no code implementations • 29 May 2018 • Tony C. W. Mok, Albert C. S. Chung
While it is often easy for researchers to use data augmentation to expand the size of training sets, constructing and generating generic augmented data that is able to teach the network the desired invariance and robustness properties using traditional data augmentation techniques is challenging in practice.
no code implementations • 11 Nov 2017 • Siqi Bao, Pei Wang, Tony C. W. Mok, Albert C. S. Chung
In this paper, a novel 3D deep learning network is proposed for brain MR image segmentation with randomized connection, which can decrease the dependency between layers and increase the network capacity.
no code implementations • 24 Oct 2016 • Siqi Bao, Albert C. S. Chung
This label fusion method is formulated on a graph, which embraces both label priors from atlases and anatomical priors from target image.
no code implementations • CVPR 2013 • Ning Zhu, Albert C. S. Chung
In this paper, we propose a graph-based method for 3D vessel tree structure segmentation based on a new tubularity Markov tree model (TMT ), which works as both new energy function and graph construction method.