AI-driven 3D Spatial Transcriptomics

no code implementations • 25 Feb 2025 • Cristina Almagro-Pérez, Andrew H. Song, Luca Weishaupt, Ahrong Kim, Guillaume Jaume, Drew F. K. Williamson, Konstantin Hemker, Ming Y. Lu, Kritika Singh, Bowen Chen, Long Phi Le, Alexander S. Baras, Sizun Jiang, Ali Bashashati, Jonathan T. C. Liu, Faisal Mahmood

A comprehensive three-dimensional (3D) map of tissue architecture and gene expression is crucial for illuminating the complexity and heterogeneity of tissues across diverse biomedical applications.

Multimodal Prototyping for cancer survival prediction

1 code implementation • 28 Jun 2024 • Andrew H. Song, Richard J. Chen, Guillaume Jaume, Anurag J. Vaidya, Alexander S. Baras, Faisal Mahmood

Multimodal survival methods combining gigapixel histology whole-slide images (WSIs) and transcriptomic profiles are particularly promising for patient prognostication and stratification.

Prediction Survival Prediction +1