1 code implementation • 21 Jan 2022 • Vishwanatha M. Rao, Zihan Wan, David J. Ma, Pin-Yu Lee, Ye Tian, Andrew F. Laine, Jia Guo
Transformers have demonstrated success in natural image segmentation and have recently been applied to 3D medical image segmentation tasks due to their ability to capture long-distance relationships in the input where the local receptive fields of CNNs struggle.
no code implementations • 26 Sep 2021 • Elena Ivanova, Kam W. Leong, Andrew F. Laine
Circulating Tumor Cells (CTCs) bear great promise as biomarkers in tumor prognosis.
no code implementations • 22 Jul 2020 • Sang Won Lee, Yueh-Ting Chiu, Philip Brudnicki, Audrey M. Bischoff, Angus Jelinek, Jenny Zijun Wang, Danielle R. Bogdanowicz, Andrew F. Laine, Jia Guo, Helen H. Lu
Recent advances in the interdisciplinary scientific field of machine perception, computer vision, and biomedical engineering underpin a collection of machine learning algorithms with a remarkable ability to decipher the contents of microscope and nanoscope images.
no code implementations • 9 Jul 2020 • Jie Yang, Elsa D. Angelini, Pallavi P. Balte, Eric A. Hoffman, John H. M. Austin, Benjamin M. Smith, R. Graham Barr, Andrew F. Laine
Pulmonary emphysema overlaps considerably with chronic obstructive pulmonary disease (COPD), and is traditionally subcategorized into three subtypes previously identified on autopsy.
no code implementations • 15 Jan 2020 • Haoran Sun, Xueqing Liu, Xinyang Feng, Chen Liu, Nanyan Zhu, Sabrina J. Gjerswold-Selleck, Hong-Jian Wei, Pavan S. Upadhyayula, Angeliki Mela, Cheng-Chia Wu, Peter D. Canoll, Andrew F. Laine, J. Thomas Vaughan, Scott A. Small, Jia Guo
Together, these studies validate our hypothesis that a deep learning approach can potentially replace the need for GBCAs in brain MRI.
1 code implementation • 15 Jan 2020 • Nanyan Zhu, Chen Liu, Zakary S. Singer, Tal Danino, Andrew F. Laine, Jia Guo
The ability to extrapolate gene expression dynamics in living single cells requires robust cell segmentation, and one of the challenges is the amorphous or irregularly shaped cell boundaries.
no code implementations • 28 Dec 2018 • Jie Yang, Si-Qi Liu, Sasa Grbic, Arnaud Arindra Adiyoso Setio, Zhoubing Xu, Eli Gibson, Guillaume Chabin, Bogdan Georgescu, Andrew F. Laine, Dorin Comaniciu
Synthesizing the objects of interests, such as lung nodules, in medical images based on the distribution of annotated datasets can be helpful for improving the supervised learning tasks, especially when the datasets are limited by size and class balance.
no code implementations • 19 Dec 2018 • Xinyang Feng, Jie Yang, Andrew F. Laine, Elsa D. Angelini
In neuroimaging studies, the human cortex is commonly modeled as a sphere to preserve the topological structure of the cortical surface.
no code implementations • 4 Jul 2017 • Xinyang Feng, Jie Yang, Andrew F. Laine, Elsa D. Angelini
Automated detection and segmentation of pulmonary nodules on lung computed tomography (CT) scans can facilitate early lung cancer diagnosis.
no code implementations • 5 Dec 2016 • Jie Yang, Elsa D. Angelini, Benjamin M. Smith, John H. M. Austin, Eric A. Hoffman, David A. Bluemke, R. Graham Barr, Andrew F. Laine
Pulmonary emphysema is traditionally subcategorized into three subtypes, which have distinct radiological appearances on computed tomography (CT) and can help with the diagnosis of chronic obstructive pulmonary disease (COPD).