no code implementations • 15 Jan 2025 • Sneha N. Naik, Elsa D. Angelini, Eric A. Hoffman, Elizabeth C. Oelsner, R. Graham Barr, Benjamin M. Smith, Andrew F. Laine
In this study, we present a novel attention-based Multi-view Swin Transformer to infer FL ALR values from segmented cardiac CT scans.
1 code implementation • 12 Sep 2024 • Aaron Cao, Zongyu Li, Jordan Jomsky, Andrew F. Laine, Jia Guo
The proposed model achieved the highest overall performance across all metrics (DSC 0. 88383; VS 0. 97076; ASSD 0. 33604), significantly outperforming all non-Mamba-based models (P < 0. 001).
no code implementations • 1 Mar 2024 • Artur Wysoczanski, Nabil Ettehadi, Soroush Arabshahi, Yifei Sun, Karen Hinkley Stukovsky, Karol E. Watson, MeiLan K. Han, Erin D Michos, Alejandro P. Comellas, Eric A. Hoffman, Andrew F. Laine, R. Graham Barr, Elsa D. Angelini
Pulmonary emphysema, the progressive, irreversible loss of lung tissue, is conventionally categorized into three subtypes identifiable on pathology and on lung computed tomography (CT) images.
no code implementations • 28 Feb 2024 • Sneha N. Naik, Elsa D. Angelini, R. Graham Barr, Norrina Allen, Alain Bertoni, Eric A. Hoffman, Ani Manichaikul, Jim Pankow, Wendy Post, Yifei Sun, Karol Watson, Benjamin M. Smith, Andrew F. Laine
High-resolution full lung CT scans now enable the detailed segmentation of airway trees up to the 6th branching generation.
no code implementations • 28 Feb 2024 • Xuzhe Zhang, Elsa D. Angelini, Eric A. Hoffman, Karol E. Watson, Benjamin M. Smith, R. Graham Barr, Andrew F. Laine
Robust quantification of pulmonary emphysema on computed tomography (CT) remains challenging for large-scale research studies that involve scans from different scanner types and for translation to clinical scans.
1 code implementation • 13 Dec 2023 • Aaron Cao, Vishwanatha M. Rao, Kejia Liu, Xinru Liu, Andrew F. Laine, Jia Guo
Subcortical segmentation remains challenging despite its important applications in quantitative structural analysis of brain MRI scans.
1 code implementation • CVPR 2024 • Xuzhe Zhang, Yuhao Wu, Elsa Angelini, Ang Li, Jia Guo, Jerod M. Rasmussen, Thomas G. O'Connor, Pathik D. Wadhwa, Andrea Parolin Jackowski, Hai Li, Jonathan Posner, Andrew F. Laine, Yun Wang
In this study, we introduce Masked Autoencoding and Pseudo-Labeling Segmentation (MAPSeg), a $\textbf{unified}$ UDA framework with great versatility and superior performance for heterogeneous and volumetric medical image segmentation.
1 code implementation • 21 Jan 2022 • Vishwanatha M. Rao, Zihan Wan, Soroush Arabshahi, David J. Ma, Pin-Yu Lee, Ye Tian, Xuzhe Zhang, Andrew F. Laine, Jia Guo
Transformers have demonstrated success in natural image segmentation and have recently been applied to 3D medical image segmentation tasks due to their ability to capture long-distance relationships in the input where the local receptive fields of CNNs struggle.
no code implementations • 26 Sep 2021 • Elena Ivanova, Kam W. Leong, Andrew F. Laine
Circulating Tumor Cells (CTCs) bear great promise as biomarkers in tumor prognosis.
no code implementations • 22 Jul 2020 • Sang Won Lee, Yueh-Ting Chiu, Philip Brudnicki, Audrey M. Bischoff, Angus Jelinek, Jenny Zijun Wang, Danielle R. Bogdanowicz, Andrew F. Laine, Jia Guo, Helen H. Lu
Recent advances in the interdisciplinary scientific field of machine perception, computer vision, and biomedical engineering underpin a collection of machine learning algorithms with a remarkable ability to decipher the contents of microscope and nanoscope images.
no code implementations • 9 Jul 2020 • Jie Yang, Elsa D. Angelini, Pallavi P. Balte, Eric A. Hoffman, John H. M. Austin, Benjamin M. Smith, R. Graham Barr, Andrew F. Laine
Pulmonary emphysema overlaps considerably with chronic obstructive pulmonary disease (COPD), and is traditionally subcategorized into three subtypes previously identified on autopsy.
no code implementations • 15 Jan 2020 • Haoran Sun, Xueqing Liu, Xinyang Feng, Chen Liu, Nanyan Zhu, Sabrina J. Gjerswold-Selleck, Hong-Jian Wei, Pavan S. Upadhyayula, Angeliki Mela, Cheng-Chia Wu, Peter D. Canoll, Andrew F. Laine, J. Thomas Vaughan, Scott A. Small, Jia Guo
Together, these studies validate our hypothesis that a deep learning approach can potentially replace the need for GBCAs in brain MRI.
1 code implementation • 15 Jan 2020 • Nanyan Zhu, Chen Liu, Zakary S. Singer, Tal Danino, Andrew F. Laine, Jia Guo
The ability to extrapolate gene expression dynamics in living single cells requires robust cell segmentation, and one of the challenges is the amorphous or irregularly shaped cell boundaries.
no code implementations • 28 Dec 2018 • Jie Yang, Si-Qi Liu, Sasa Grbic, Arnaud Arindra Adiyoso Setio, Zhoubing Xu, Eli Gibson, Guillaume Chabin, Bogdan Georgescu, Andrew F. Laine, Dorin Comaniciu
Synthesizing the objects of interests, such as lung nodules, in medical images based on the distribution of annotated datasets can be helpful for improving the supervised learning tasks, especially when the datasets are limited by size and class balance.
no code implementations • 19 Dec 2018 • Xinyang Feng, Jie Yang, Andrew F. Laine, Elsa D. Angelini
In neuroimaging studies, the human cortex is commonly modeled as a sphere to preserve the topological structure of the cortical surface.
no code implementations • 4 Jul 2017 • Xinyang Feng, Jie Yang, Andrew F. Laine, Elsa D. Angelini
Automated detection and segmentation of pulmonary nodules on lung computed tomography (CT) scans can facilitate early lung cancer diagnosis.
no code implementations • 5 Dec 2016 • Jie Yang, Elsa D. Angelini, Benjamin M. Smith, John H. M. Austin, Eric A. Hoffman, David A. Bluemke, R. Graham Barr, Andrew F. Laine
Pulmonary emphysema is traditionally subcategorized into three subtypes, which have distinct radiological appearances on computed tomography (CT) and can help with the diagnosis of chronic obstructive pulmonary disease (COPD).