1 code implementation • 20 Jun 2024 • Deepa Krishnaswamy, Vamsi Krishna Thiriveedhi, Cosmin Ciausu, David Clunie, Steve Pieper, Ron Kikinis, Andrey Fedorov
There is a dire need for medical imaging datasets with accompanying annotations to perform downstream patient analysis.
1 code implementation • 16 Apr 2024 • Deepa Krishnaswamy, Bálint Kovács, Stefan Denner, Steve Pieper, David Clunie, Christopher P. Bridge, Tina Kapur, Klaus H. Maier-Hein, Andrey Fedorov
With the wealth of medical image data, efficient curation is essential.
no code implementations • 22 Mar 2024 • Cosmin Ciausu, Deepa Krishnaswamy, Benjamin Billot, Steve Pieper, Ron Kikinis, Andrey Fedorov
Our approach shows comparable results compared to fully-supervised segmentation methods trained on MR data.
no code implementations • 6 Sep 2023 • Nikos Chrisochoides, Andrey Fedorov, Yixun Liu, Andriy Kot, Panos Foteinos, Fotis Drakopoulos, Christos Tsolakis, Emmanuel Billias, Olivier Clatz, Nicholas Ayache, Alex Golby, Peter Black, Ron Kikinis
Current neurosurgical procedures utilize medical images of various modalities to enable the precise location of tumors and critical brain structures to plan accurate brain tumor resection.
2 code implementations • 31 May 2023 • Deepa Krishnaswamy, Dennis Bontempi, Vamsi Thiriveedhi, Davide Punzo, David Clunie, Christopher P Bridge, Hugo JWL Aerts, Ron Kikinis, Andrey Fedorov
As part of the effort to enrich public data available within NCI Imaging Data Commons (IDC), here we introduce AI-generated annotations for two collections of computed tomography images of the chest, NSCLC-Radiomics, and the National Lung Screening Trial.
1 code implementation • 16 Mar 2023 • Daniela P. Schacherer, Markus D. Herrmann, David A. Clunie, Henning Höfener, William Clifford, William J. R. Longabaugh, Steve Pieper, Ron Kikinis, Andrey Fedorov, André Homeyer
Conclusions: We conclude that the IDC facilitates approaching the reproducibility limit of CompPath research (i) by enabling researchers to reuse exactly the same datasets and (ii) by integrating with cloud ML services so that experiments can be run in identically configured computing environments.
2 code implementations • 16 Jul 2018 • Michael Schwier, Joost van Griethuysen, Mark G Vangel, Steve Pieper, Sharon Peled, Clare M. Tempany, Hugo JWL Aerts, Ron Kikinis, Fiona M Fennessy, Andrey Fedorov
In this study we assessed the repeatability of the values of radiomics features for small prostate tumors using test-retest Multiparametric Magnetic Resonance Imaging (mpMRI) images.
no code implementations • 7 May 2017 • Naiyun Zhou, Andrey Fedorov, Fiona Fennessy, Ron Kikinis, Yi Gao
In this work, we present an analysis pipeline that includes localization of the cancer region, grading, area ratio of different Gleason grades, and cytological/architectural feature extraction.