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Found 14 papers, 8 papers with code
Assessing Reusability of Deep Learning-Based Monotherapy Drug Response Prediction Models Trained with Omics Data
In this study, we present a scoring system for assessing the reusability of prediction DRP models, and apply it to 17 peer-reviewed DL-based DRP models.
DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery through Sophisticated AI System Technologies
In the upcoming decade, deep learning may revolutionize the natural sciences, enhancing our capacity to model and predict natural occurrences.
Transferable Graph Neural Fingerprint Models for Quick Response to Future Bio-Threats
With this dataset, we trained graph neural fingerprint docking models for high-throughput virtual COVID-19 drug screening.
Deep learning methods for drug response prediction in cancer: predominant and emerging trends
A wave of recent papers demonstrates promising results in predicting cancer response to drug treatments while utilizing deep learning methods.
Deep Surrogate Docking: Accelerating Automated Drug Discovery with Graph Neural Networks
The process of screening molecules for desirable properties is a key step in several applications, ranging from drug discovery to material design.
Scaffold-Induced Molecular Graph (SIMG): Effective Graph Sampling Methods for High-Throughput Computational Drug Discovery
Scaffold based drug discovery (SBDD) is a technique for drug discovery which pins chemical scaffolds as the framework of design.
Protein-Ligand Docking Surrogate Models: A SARS-CoV-2 Benchmark for Deep Learning Accelerated Virtual Screening
Our analysis of the speedup explains that to screen more molecules under a docking paradigm, another order of magnitude speedup must come from model accuracy rather than computing speed (which, if increased, will not anymore alter our throughput to screen molecules).
Spatial Graph Attention and Curiosity-driven Policy for Antiviral Drug Discovery
We developed Distilled Graph Attention Policy Network (DGAPN), a reinforcement learning model to generate novel graph-structured chemical representations that optimize user-defined objectives by efficiently navigating a physically constrained domain.
A cross-study analysis of drug response prediction in cancer cell lines
To provide a more rigorous assessment of model generalizability between different studies, we use machine learning to analyze five publicly available cell line-based data sets: NCI60, CTRP, GDSC, CCLE and gCSI.
Scaffold Embeddings: Learning the Structure Spanned by Chemical Fragments, Scaffolds and Compounds
Molecules have seemed like a natural fit to deep learning's tendency to handle a complex structure through representation learning, given enough data.
Learning Curves for Drug Response Prediction in Cancer Cell Lines
In contrast, a GBDT with hyperparameter tuning exhibits superior performance as compared with both NNs at the lower range of training sizes for two of the datasets, whereas the mNN performs better at the higher range of training sizes.
Regression Enrichment Surfaces: a Simple Analysis Technique for Virtual Drug Screening Models
We present a new method for understanding the performance of a model in virtual drug screening tasks.
Targeting SARS-CoV-2 with AI- and HPC-enabled Lead Generation: A First Data Release
Researchers across the globe are seeking to rapidly repurpose existing drugs or discover new drugs to counter the the novel coronavirus disease (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
A Systematic Approach to Featurization for Cancer Drug Sensitivity Predictions with Deep Learning
By combining various cancer cell line (CCL) drug screening panels, the size of the data has grown significantly to begin understanding how advances in deep learning can advance drug response predictions.
