Step-by-Step Guidance to Differential Anemia Diagnosis with Real-World Data and Deep Reinforcement Learning

1 code implementation • 3 Dec 2024 • Lillian Muyama, Estelle Lu, Geoffrey Cheminet, Jacques Pouchot, Bastien Rance, Anne-Isabelle Tropeano, Antoine Neuraz, Adrien Coulet

Clinical diagnostic guidelines outline the key questions to answer to reach a diagnosis.

Decision Making Deep Reinforcement Learning +1

Fake it till you predict it: data augmentation strategies to detect initiation and termination of oncology treatment

no code implementations • 14 Oct 2024 • Valentin Pohyer, Elizabeth Fabre, Stéphane Oudard, Laure Fournier, Bastien Rance

We used pattern recognition for dates, dictionaries for drugs and transformer language models for the relationship, combined with a data augmentation strategy.

Data Augmentation

Enhancing Clinical Data Warehouses with Provenance and Large File Management: The gitOmmix Approach for Clinical Omics Data

1 code implementation • 5 Sep 2024 • Maxime Wack, Adrien Coulet, Anita Burgun, Bastien Rance

We introduce gitOmmix, an approach that overcomes these limitations, and illustrate its usefulness in the management of medical omics data.

Management

Facilitating phenotyping from clinical texts: the medkit library

1 code implementation • 30 Aug 2024 • Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim-Tam Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet

In addition to the core of the library, we share the operations and pipelines we already developed and invite the phenotyping community for their reuse and enrichment.