Search Results for author: Bishesh Khanal

Found 25 papers, 13 papers with code

TuneVLSeg: Prompt Tuning Benchmark for Vision-Language Segmentation Models

1 code implementation7 Oct 2024 Rabin Adhikari, Safal Thapaliya, Manish Dhakal, Bishesh Khanal

This work presents an open-source benchmarking framework, TuneVLSeg, to integrate various unimodal and multimodal prompt tuning techniques into VLSMs, making prompt tuning usable for downstream segmentation datasets with any number of classes.

Benchmarking Segmentation +2

VLSM-Adapter: Finetuning Vision-Language Segmentation Efficiently with Lightweight Blocks

1 code implementation10 May 2024 Manish Dhakal, Rabin Adhikari, Safal Thapaliya, Bishesh Khanal

Foundation Vision-Language Models (VLMs) trained using large-scale open-domain images and text pairs have recently been adapted to develop Vision-Language Segmentation Models (VLSMs) that allow providing text prompts during inference to guide image segmentation.

Image Segmentation Medical Image Segmentation +2

AI-Assisted Cervical Cancer Screening

no code implementations18 Mar 2024 Kanchan Poudel, Lisasha Poudel, Prabin Raj Shakya, Atit Poudel, Archana Shrestha, Bishesh Khanal

Most studies proposing AI models retrospectively use a relatively small number of already collected images from specific devices, digital cameras, or smartphones; the challenges and protocol for quality image acquisition during VIA in resource-constrained camp settings, challenges in getting gold standard, data imbalance, etc.

Investigating the Robustness of Vision Transformers against Label Noise in Medical Image Classification

no code implementations26 Feb 2024 Bidur Khanal, Prashant Shrestha, Sanskar Amgain, Bishesh Khanal, Binod Bhattarai, Cristian A. Linte

Label noise in medical image classification datasets significantly hampers the training of supervised deep learning methods, undermining their generalizability.

Image Classification Medical Image Classification

Benchmarking Encoder-Decoder Architectures for Biplanar X-ray to 3D Shape Reconstruction

1 code implementation24 Sep 2023 Mahesh Shakya, Bishesh Khanal

Our results show that attention-based methods that capture global spatial relationships tend to perform better across all anatomies and datasets; performance on clinically relevant subgroups may be overestimated without disaggregated reporting; ribs are substantially more difficult to reconstruct compared to femur, hip and spine; and the dice score improvement does not always bring a corresponding improvement in the automatic estimation of clinically relevant parameters.

3D Shape Reconstruction Anatomy +2

Exploring Transfer Learning in Medical Image Segmentation using Vision-Language Models

1 code implementation15 Aug 2023 Kanchan Poudel, Manish Dhakal, Prasiddha Bhandari, Rabin Adhikari, Safal Thapaliya, Bishesh Khanal

While VLSMs exhibit enhanced performance in handling pooled datasets with diverse modalities and show potential robustness to domain shifts compared to conventional segmentation models, our results suggest that novel approaches are required to enable VLSMs to leverage the various auxiliary information available through language prompts.

Image Segmentation Medical Image Segmentation +3

FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare

no code implementations11 Aug 2023 Karim Lekadir, Aasa Feragen, Abdul Joseph Fofanah, Alejandro F Frangi, Alena Buyx, Anais Emelie, Andrea Lara, Antonio R Porras, An-Wen Chan, Arcadi Navarro, Ben Glocker, Benard O Botwe, Bishesh Khanal, Brigit Beger, Carol C Wu, Celia Cintas, Curtis P Langlotz, Daniel Rueckert, Deogratias Mzurikwao, Dimitrios I Fotiadis, Doszhan Zhussupov, Enzo Ferrante, Erik Meijering, Eva Weicken, Fabio A González, Folkert W Asselbergs, Fred Prior, Gabriel P Krestin, Gary Collins, Geletaw S Tegenaw, Georgios Kaissis, Gianluca Misuraca, Gianna Tsakou, Girish Dwivedi, Haridimos Kondylakis, Harsha Jayakody, Henry C Woodruf, Horst Joachim Mayer, Hugo JWL Aerts, Ian Walsh, Ioanna Chouvarda, Irène Buvat, Isabell Tributsch, Islem Rekik, James Duncan, Jayashree Kalpathy-Cramer, Jihad Zahir, Jinah Park, John Mongan, Judy W Gichoya, Julia A Schnabel, Kaisar Kushibar, Katrine Riklund, Kensaku MORI, Kostas Marias, Lameck M Amugongo, Lauren A Fromont, Lena Maier-Hein, Leonor Cerdá Alberich, Leticia Rittner, Lighton Phiri, Linda Marrakchi-Kacem, Lluís Donoso-Bach, Luis Martí-Bonmatí, M Jorge Cardoso, Maciej Bobowicz, Mahsa Shabani, Manolis Tsiknakis, Maria A Zuluaga, Maria Bielikova, Marie-Christine Fritzsche, Marina Camacho, Marius George Linguraru, Markus Wenzel, Marleen de Bruijne, Martin G Tolsgaard, Marzyeh Ghassemi, Md Ashrafuzzaman, Melanie Goisauf, Mohammad Yaqub, Mónica Cano Abadía, Mukhtar M E Mahmoud, Mustafa Elattar, Nicola Rieke, Nikolaos Papanikolaou, Noussair Lazrak, Oliver Díaz, Olivier Salvado, Oriol Pujol, Ousmane Sall, Pamela Guevara, Peter Gordebeke, Philippe Lambin, Pieta Brown, Purang Abolmaesumi, Qi Dou, Qinghua Lu, Richard Osuala, Rose Nakasi, S Kevin Zhou, Sandy Napel, Sara Colantonio, Shadi Albarqouni, Smriti Joshi, Stacy Carter, Stefan Klein, Steffen E Petersen, Susanna Aussó, Suyash Awate, Tammy Riklin Raviv, Tessa Cook, Tinashe E M Mutsvangwa, Wendy A Rogers, Wiro J Niessen, Xènia Puig-Bosch, Yi Zeng, Yunusa G Mohammed, Yves Saint James Aquino, Zohaib Salahuddin, Martijn P A Starmans

This work describes the FUTURE-AI guideline as the first international consensus framework for guiding the development and deployment of trustworthy AI tools in healthcare.

Fairness

Improving Medical Image Classification in Noisy Labels Using Only Self-supervised Pretraining

1 code implementation8 Aug 2023 Bidur Khanal, Binod Bhattarai, Bishesh Khanal, Cristian A. Linte

In this work, we explore contrastive and pretext task-based self-supervised pretraining to initialize the weights of a deep learning classification model for two medical datasets with self-induced noisy labels -- NCT-CRC-HE-100K tissue histological images and COVID-QU-Ex chest X-ray images.

Learning with noisy labels Medical Image Classification +1

Deep-learning Assisted Detection and Quantification of (oo)cysts of Giardia and Cryptosporidium on Smartphone Microscopy Images

1 code implementation11 Apr 2023 Suprim Nakarmi, Sanam Pudasaini, Safal Thapaliya, Pratima Upretee, Retina Shrestha, Basant Giri, Bhanu Bhakta Neupane, Bishesh Khanal

We evaluate the performance of four state-of-the-art object detectors to detect (oo)cysts of Giardia and Cryptosporidium on a custom dataset that includes both smartphone and brightfield microscopic images from vegetable samples.

Deep Learning object-detection +1

COVID-19-related Nepali Tweets Classification in a Low Resource Setting

1 code implementation SMM4H (COLING) 2022 Rabin Adhikari, Safal Thapaliya, Nirajan Basnet, Samip Poudel, Aman Shakya, Bishesh Khanal

Billions of people across the globe have been using social media platforms in their local languages to voice their opinions about the various topics related to the COVID-19 pandemic.

FixMatchSeg: Fixing FixMatch for Semi-Supervised Semantic Segmentation

no code implementations31 Jul 2022 Pratima Upretee, Bishesh Khanal

Supervised deep learning methods for semantic medical image segmentation are getting increasingly popular in the past few years. However, in resource constrained settings, getting large number of annotated images is very difficult as it mostly requires experts, is expensive and time-consuming. Semi-supervised segmentation can be an attractive solution where a very few labeled images are used along with a large number of unlabeled ones.

Anatomy Image Segmentation +3

Label Geometry Aware Discriminator for Conditional Generative Networks

no code implementations12 May 2021 Suman Sapkota, Bidur Khanal, Binod Bhattarai, Bishesh Khanal, Tae-Kyun Kim

Multi-domain image-to-image translation with conditional Generative Adversarial Networks (GANs) can generate highly photo realistic images with desired target classes, yet these synthetic images have not always been helpful to improve downstream supervised tasks such as image classification.

Data Augmentation Image Classification +1

Uncertainty Estimation in Deep 2D Echocardiography Segmentation

no code implementations19 May 2020 Lavsen Dahal, Aayush Kafle, Bishesh Khanal

2D echocardiography is the most common imaging modality for cardiovascular diseases.

Weakly Supervised Localisation for Fetal Ultrasound Images

2 code implementations2 Aug 2018 Nicolas Toussaint, Bishesh Khanal, Matthew Sinclair, Alberto Gomez, Emily Skelton, Jacqueline Matthew, Julia A. Schnabel

This paper addresses the task of detecting and localising fetal anatomical regions in 2D ultrasound images, where only image-level labels are present at training, i. e. without any localisation or segmentation information.

Pose Estimation Segmentation

Fast Multiple Landmark Localisation Using a Patch-based Iterative Network

1 code implementation18 Jun 2018 Yuanwei Li, Amir Alansary, Juan J. Cerrolaza, Bishesh Khanal, Matthew Sinclair, Jacqueline Matthew, Chandni Gupta, Caroline Knight, Bernhard Kainz, Daniel Rueckert

PIN is computationally efficient since the inference stage only selectively samples a small number of patches in an iterative fashion rather than a dense sampling at every location in the volume.

Multi-Task Learning

Adapted and Oversegmenting Graphs: Application to Geometric Deep Learning

no code implementations1 Jun 2018 Alberto Gomez, Veronika A. Zimmer, Bishesh Khanal, Nicolas Toussaint, Julia A. Schnabel

From the adapted graph, we also propose the computation of a dual graph, which inherits the saliency measure from the adapted graph, and whose edges run along image features, hence producing an oversegmenting graph.

Clustering Deep Learning +2

3D Reconstruction in Canonical Co-ordinate Space from Arbitrarily Oriented 2D Images

no code implementations19 Sep 2017 Benjamin Hou, Bishesh Khanal, Amir Alansary, Steven McDonagh, Alice Davidson, Mary Rutherford, Jo V. Hajnal, Daniel Rueckert, Ben Glocker, Bernhard Kainz

We extensively evaluate the effectiveness of our approach quantitatively on simulated Magnetic Resonance Imaging (MRI), fetal brain imagery with synthetic motion and further demonstrate qualitative results on real fetal MRI data where our method is integrated into a full reconstruction and motion compensation pipeline.

3D Reconstruction Image Reconstruction +2

Cannot find the paper you are looking for? You can Submit a new open access paper.