Search Results for author: Carlos D. Bustamante

Found 4 papers, 2 papers with code

Ancestry-specific analyses of genome-wide data confirm the settlement sequence of Polynesia

no code implementations6 Dec 2022 Alexander G. Ioannidis, Javier Blanco-Portillo, Erika Hagelberg, Juan Esteban Rodríguez-Rodríguez, Keolu Fox, Adrian V. S. Hill, Carlos D. Bustamante, Marcus W. Feldman, Alexander J. Mentzer, Andrés Moreno-Estrada

By demonstrating the role that historical population replacements and waves of admixture have played around the world, the genetics work of Reich and colleagues has provided a paradigm for understanding human history [Reich et al. 2009; Reich et al. 2012; Patterson et al. 2012].

LitGen: Genetic Literature Recommendation Guided by Human Explanations

1 code implementation24 Sep 2019 Allen Nie, Arturo L. Pineda, Matt W. Wright Hannah Wand, Bryan Wulf, Helio A. Costa, Ronak Y. Patel, Carlos D. Bustamante, James Zou

In collaboration with the Clinical Genomic Resource (ClinGen)---the flagship NIH program for clinical curation---we propose the first machine learning system, LitGen, that can retrieve papers for a particular variant and filter them by specific evidence types used by curators to assess for pathogenicity.


DeepTag: inferring all-cause diagnoses from clinical notes in under-resourced medical domain

1 code implementation28 Jun 2018 Allen Nie, Ashley Zehnder, Rodney L. Page, Arturo L. Pineda, Manuel A. Rivas, Carlos D. Bustamante, James Zou

However, clinicians lack the time and resource to annotate patient records with standard medical diagnostic codes and most veterinary visits are captured in free text notes.

Network Enhancement: a general method to denoise weighted biological networks

no code implementations9 May 2018 Bo Wang, Armin Pourshafeie, Marinka Zitnik, Junjie Zhu, Carlos D. Bustamante, Serafim Batzoglou, Jure Leskovec

Networks are ubiquitous in biology where they encode connectivity patterns at all scales of organization, from molecular to the biome.


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