1 code implementation • 5 Dec 2024 • Surya Dheeshjith, Adam Subel, Alistair Adcroft, Julius Busecke, Carlos Fernandez-Granda, Shubham Gupta, Laure Zanna
AI emulators for forecasting have emerged as powerful tools that can outperform conventional numerical predictions.
1 code implementation • 18 Nov 2024 • Jason Qin, Hans-Hermann Wessels, Carlos Fernandez-Granda, Yuhan Hao
The advancement of novel combinatorial CRISPR screening technologies enables the identification of synergistic gene combinations on a large scale.
no code implementations • 30 Oct 2024 • Qidong Yang, Weicheng Zhu, Joseph Keslin, Laure Zanna, Tim G. J. Rudner, Carlos Fernandez-Granda
In this paper, we propose a Monte Carlo framework to estimate probabilities and confidence intervals associated with the distribution of a discrete sequence.
no code implementations • 28 Oct 2024 • Jan Witowski, Ken Zeng, Joseph Cappadona, Jailan Elayoubi, Elena Diana Chiru, Nancy Chan, Young-Joon Kang, Frederick Howard, Irina Ostrovnaya, Carlos Fernandez-Granda, Freya Schnabel, Ugur Ozerdem, Kangning Liu, Zoe Steinsnyder, Nitya Thakore, Mohammad Sadic, Frank Yeung, Elisa Liu, Theodore Hill, Benjamin Swett, Danielle Rigau, Andrew Clayburn, Valerie Speirs, Marcus Vetter, Lina Sojak, Simone Muenst Soysal, Daniel Baumhoer, Khalil Choucair, Yu Zong, Lina Daoud, Anas Saad, Waleed Abdulsattar, Rafic Beydoun, Jia-Wern Pan, Haslina Makmur, Soo-Hwang Teo, Linda Ma Pak, Victor Angel, Dovile Zilenaite-Petrulaitiene, Arvydas Laurinavicius, Natalie Klar, Brian D. Piening, Carlo Bifulco, Sun-Young Jun, Jae Pak Yi, Su Hyun Lim, Adam Brufsky, Francisco J. Esteva, Lajos Pusztai, Yann Lecun, Krzysztof J. Geras
Treatment selection in breast cancer is guided by molecular subtypes and clinical characteristics.
no code implementations • 27 May 2024 • Yanqi Xu, Yiqiu Shen, Carlos Fernandez-Granda, Laura Heacock, Krzysztof J. Geras
This study evaluates the applicability of these transformer-based design choices when applied to a screening mammography dataset that represents these distinct medical imaging data characteristics.
no code implementations • 27 Nov 2023 • Weicheng Zhu, Sheng Liu, Carlos Fernandez-Granda, Narges Razavian
Self-supervised learning (SSL) has emerged as a powerful technique for learning rich representations from unlabeled data.
1 code implementation • 21 Nov 2023 • Boyang Yu, Aakash Kaku, Kangning Liu, Avinash Parnandi, Emily Fokas, Anita Venkatesan, Natasha Pandit, Rajesh Ranganath, Heidi Schambra, Carlos Fernandez-Granda
We applied the COBRA score to address a key limitation of current clinical evaluation of upper-body impairment in stroke patients.
1 code implementation • 20 Nov 2023 • Jesus de la Fuente, Naroa Legarra, Guillermo Serrano, Irene Marin-Goni, Aintzane Diaz-Mazkiaran, Markel Benito Sendin, Ana Garcia Osta, Krishna R. Kalari, Carlos Fernandez-Granda, Idoia Ochoa, Mikel Hernaez
Also, we demonstrate that Sweetwater effectively uncovers biologically meaningful patterns during the training process, increasing the reliability of the results.
no code implementations • 23 Dec 2022 • Xiao Li, Sheng Liu, Jinxin Zhou, Xinyu Lu, Carlos Fernandez-Granda, Zhihui Zhu, Qing Qu
In particular, we discovered a systematic pattern that emerges when linear probing pre-trained models on downstream training data: the more feature collapse of pre-trained models on downstream training data, the higher the transfer accuracy.
1 code implementation • 2 Dec 2022 • Sheng Liu, Xu Zhang, Nitesh Sekhar, Yue Wu, Prateek Singhal, Carlos Fernandez-Granda
Empirical studies suggest that machine learning models trained with empirical risk minimization (ERM) often rely on attributes that may be spuriously correlated with the class labels.
2 code implementations • CVPR 2023 • Kangning Liu, Weicheng Zhu, Yiqiu Shen, Sheng Liu, Narges Razavian, Krzysztof J. Geras, Carlos Fernandez-Granda
The framework employs a novel self-paced sampling strategy to ensure the accuracy of pseudo labels.
1 code implementation • 11 Oct 2022 • Adria Marcos-Morales, Matan Leibovich, Sreyas Mohan, Joshua Lawrence Vincent, Piyush Haluai, Mai Tan, Peter Crozier, Carlos Fernandez-Granda
In this work, we propose two novel metrics: the unsupervised mean squared error (MSE) and the unsupervised peak signal-to-noise ratio (PSNR), which are computed using only noisy data.
1 code implementation • 23 Mar 2022 • Weicheng Zhu, Carlos Fernandez-Granda, Narges Razavian
The resulting representations and clusters from self-supervision are used as features of a survival model for recurrence prediction at the patient level.
1 code implementation • 21 Dec 2021 • Avinash Parnandi, Aakash Kaku, Anita Venkatesan, Natasha Pandit, Audre Wirtanen, Haresh Rajamohan, Kannan Venkataramanan, Dawn Nilsen, Carlos Fernandez-Granda, Heidi Schambra
Here, we present PrimSeq, a pipeline to classify and count functional motions trained in stroke rehabilitation.
no code implementations • 21 Nov 2021 • Sheng Liu, Aakash Kaku, Weicheng Zhu, Matan Leibovich, Sreyas Mohan, Boyang Yu, Haoxiang Huang, Laure Zanna, Narges Razavian, Jonathan Niles-Weed, Carlos Fernandez-Granda
Reliable probability estimation is of crucial importance in many real-world applications where there is inherent (aleatoric) uncertainty.
1 code implementation • 3 Nov 2021 • Aakash Kaku, Kangning Liu, Avinash Parnandi, Haresh Rengaraj Rajamohan, Kannan Venkataramanan, Anita Venkatesan, Audre Wirtanen, Natasha Pandit, Heidi Schambra, Carlos Fernandez-Granda
To address this, we propose a novel approach for high-resolution action identification, inspired by speech-recognition techniques, which is based on a sequence-to-sequence model that directly predicts the sequence of actions.
2 code implementations • CVPR 2022 • Sheng Liu, Kangning Liu, Weicheng Zhu, Yiqiu Shen, Carlos Fernandez-Granda
We discover a phenomenon that has been previously reported in the context of classification: the networks tend to first fit the clean pixel-level labels during an "early-learning" phase, before eventually memorizing the false annotations.
1 code implementation • 22 Sep 2021 • Xiaoxia Zhang, Quentin Duchemin, Kangning Liu, Sebastian Flassbeck, Cem Gultekin, Carlos Fernandez-Granda, Jakob Assländer
We find, however, that in heterogeneous parameter spaces, i. e. in spaces in which the variance of the estimated parameters varies considerably, good performance is hard to achieve and requires arduous tweaking of the loss function, hyper parameters, and the distribution of the training data in parameter space.
no code implementations • NeurIPS 2021 • Sreyas Mohan, Joshua L. Vincent, Ramon Manzorro, Peter A. Crozier, Eero P. Simoncelli, Carlos Fernandez-Granda
Deep convolutional neural networks (CNNs) for image denoising are usually trained on large datasets.
1 code implementation • 13 Jun 2021 • Kangning Liu, Yiqiu Shen, Nan Wu, Jakub Chłędowski, Carlos Fernandez-Granda, Krzysztof J. Geras
In cancer diagnosis, interpretability can be achieved by localizing the region of the input image responsible for the output, i. e. the location of a lesion.
1 code implementation • NeurIPS 2021 • Sheng Liu, Xiao Li, Yuexiang Zhai, Chong You, Zhihui Zhu, Carlos Fernandez-Granda, Qing Qu
Furthermore, we show that our ConvNorm can reduce the layerwise spectral norm of the weight matrices and hence improve the Lipschitzness of the network, leading to easier training and improved robustness for deep ConvNets.
no code implementations • 19 Jan 2021 • Joshua L. Vincent, Ramon Manzorro, Sreyas Mohan, Binh Tang, Dev Y. Sheth, Eero P. Simoncelli, David S. Matteson, Carlos Fernandez-Granda, Peter A. Crozier
This shows that the network exploits global and local information in the noisy measurements, for example, by adapting its filtering approach when it encounters atomic-level defects at the nanoparticle surface.
Denoising Materials Science Image and Video Processing
1 code implementation • ICCV 2021 • Dev Yashpal Sheth, Sreyas Mohan, Joshua L. Vincent, Ramon Manzorro, Peter A. Crozier, Mitesh M. Khapra, Eero P. Simoncelli, Carlos Fernandez-Granda
This is advantageous because motion compensation is computationally expensive, and can be unreliable when the input data are noisy.
Ranked #5 on Video Denoising on Set8 sigma40
1 code implementation • 24 Oct 2020 • Sreyas Mohan, Ramon Manzorro, Joshua L. Vincent, Binh Tang, Dev Yashpal Sheth, Eero P. Simoncelli, David S. Matteson, Peter A. Crozier, Carlos Fernandez-Granda
SBD outperforms existing techniques by a wide margin on a simulated benchmark dataset, as well as on real data.
1 code implementation • 4 Aug 2020 • Farah E. Shamout, Yiqiu Shen, Nan Wu, Aakash Kaku, Jungkyu Park, Taro Makino, Stanisław Jastrzębski, Duo Wang, Ben Zhang, Siddhant Dogra, Meng Cao, Narges Razavian, David Kudlowitz, Lea Azour, William Moore, Yvonne W. Lui, Yindalon Aphinyanaphongs, Carlos Fernandez-Granda, Krzysztof J. Geras
In order to verify performance in a real clinical setting, we silently deployed a preliminary version of the deep neural network at New York University Langone Health during the first wave of the pandemic, which produced accurate predictions in real-time.
2 code implementations • NeurIPS 2020 • Sheng Liu, Jonathan Niles-Weed, Narges Razavian, Carlos Fernandez-Granda
In contrast with existing approaches, which use the model output during early learning to detect the examples with clean labels, and either ignore or attempt to correct the false labels, we take a different route and instead capitalize on early learning via regularization.
Ranked #5 on Learning with noisy labels on CIFAR-10N-Random2
no code implementations • 14 Apr 2020 • Aakash Kaku, Avinash Parnandi, Anita Venkatesan, Natasha Pandit, Heidi Schambra, Carlos Fernandez-Granda
Thus, using a combination of IMU-based motion capture and deep learning, we were able to identify primitives automatically.
no code implementations • 10 Feb 2020 • Aakash Kaku, Sreyas Mohan, Avinash Parnandi, Heidi Schambra, Carlos Fernandez-Granda
Extraneous variables are variables that are irrelevant for a certain task, but heavily affect the distribution of the available data.
1 code implementation • 9 Nov 2019 • Sheng Liu, Chhavi Yadav, Carlos Fernandez-Granda, Narges Razavian
Early detection is a crucial goal in the study of Alzheimer's Disease (AD).
no code implementations • NeurIPS Workshop Deep_Invers 2019 • Zahra Kadkhodaie, Sreyas Mohan, Eero P. Simoncelli, Carlos Fernandez-Granda
Here, however, we show that bias terms used in most CNNs (additive constants, including those used for batch normalization) interfere with the interpretability of these networks, do not help performance, and in fact prevent generalization of performance to noise levels not including in the training data.
1 code implementation • ICLR 2020 • Sreyas Mohan, Zahra Kadkhodaie, Eero P. Simoncelli, Carlos Fernandez-Granda
In contrast, a bias-free architecture -- obtained by removing the constant terms in every layer of the network, including those used for batch normalization-- generalizes robustly across noise levels, while preserving state-of-the-art performance within the training range.
2 code implementations • NeurIPS 2019 • Gautier Izacard, Sreyas Mohan, Carlos Fernandez-Granda
Frequency estimation is a fundamental problem in signal processing, with applications in radar imaging, underwater acoustics, seismic imaging, and spectroscopy.
no code implementations • 12 May 2019 • Brett Bernstein, Sheng Liu, Chrysa Papadaniil, Carlos Fernandez-Granda
In this work, we consider separable inverse problems, where the data are modeled as a linear combination of functions that depend nonlinearly on certain parameters of interest.
no code implementations • 9 Apr 2019 • Sheng Liu, Mark Cheng, Hayley Brooks, Wayne Mackey, David J. Heeger, Esteban G. Tabak, Carlos Fernandez-Granda
We apply our methodology to detect anomalous individuals, to cluster the cohort into groups with different sleeping tendencies, and to obtain improved predictions of future sleep behavior.
1 code implementation • 14 Nov 2018 • Gautier Izacard, Brett Bernstein, Carlos Fernandez-Granda
We propose a learning-based approach for estimating the spectrum of a multisinusoidal signal from a finite number of samples.
no code implementations • 28 Feb 2018 • Sunli Tang, Carlos Fernandez-Granda, Sylvain Lannuzel, Brett Bernstein, Riccardo Lattanzi, Martijn Cloos, Florian Knoll, Jakob Assländer
Magnetic resonance fingerprinting (MRF) is a technique for quantitative estimation of spin-relaxation parameters from magnetic-resonance data.
Medical Physics Numerical Analysis Numerical Analysis Optimization and Control