no code implementations • 3 Jan 2025 • Jianping He, Laila Rasmy, Degui Zhi, Cui Tao
Methods: We utilized Med-BERT, an EHR-specific foundation model, and reformulated the disease binary prediction task into a token prediction task and a next visit mask token prediction task to align with Med-BERT's pretraining task format in order to improve the accuracy of pancreatic cancer (PaCa) prediction in both few-shot and fully supervised settings.
no code implementations • 4 Dec 2024 • Jianping He, Laila Rasmy, Haifang Li, Jianfu Li, Zenan Sun, Evan Yu, Degui Zhi, Cui Tao
We explored four fine-tuning strategies for GatorTron-Base: (1) Standard Fine-Tuning, (2) Hard-Prompting with Unfrozen LLMs, (3) Soft-Prompting with Frozen LLMs, and (4) Low-Rank Adaptation (LoRA) with Frozen LLMs.
no code implementations • 6 Nov 2024 • Yiming Li, Fang Li, Kirk Roberts, Licong Cui, Cui Tao, Hua Xu
Evaluation metrics included token-level analysis (BLEU, ROUGE-1, ROUGE-2, ROUGE-L) and semantic similarity scores between model-generated summaries and physician-written gold standards.
no code implementations • 26 Jun 2024 • Yiming Li, Deepthi Viswaroopan, William He, Jianfu Li, Xu Zuo, Hua Xu, Cui Tao
This study aims to evaluate the effectiveness of LLMs and traditional deep learning models in AE extraction, and to assess the impact of ensembling these models on performance.
no code implementations • 8 Apr 2024 • Yiming Li, Xueqing Peng, Jianfu Li, Xu Zuo, Suyuan Peng, Donghong Pei, Cui Tao, Hua Xu, Na Hong
This study underscores the effectiveness of LLMs like GPT in extracting relations related to acupoint locations, with implications for accurately modeling acupuncture knowledge and promoting standard implementation in acupuncture training and practice.
1 code implementation • 28 Mar 2024 • Song Wang, Yiliang Zhou, Ziqiang Han, Cui Tao, Yunyu Xiao, Ying Ding, Joydeep Ghosh, Yifan Peng
Data accuracy is essential for scientific research and policy development.
no code implementations • 28 Sep 2023 • Yiming Li, Jianfu Li, Jianping He, Cui Tao
Though Vaccines are instrumental in global health, mitigating infectious diseases and pandemic outbreaks, they can occasionally lead to adverse events (AEs).
no code implementations • 12 Sep 2023 • Xinyue Hu, Zenan Sun, Yi Nian, Yichen Wang, Yifang Dang, Fang Li, Jingna Feng, Evan Yu, Cui Tao
Objective: Our goal is to utilize Graph Neural Networks (GNNs) with claims data for ADRD risk prediction.
no code implementations • 19 Aug 2023 • Tiehang Duan, Zhenyi Wang, Gianfranco Doretto, Fang Li, Cui Tao, Donald Adjeroh
In this work, we propose a principled approach to perform dynamic evolution on the data for improvement of decoding robustness.
no code implementations • 18 Jun 2023 • Fang Li, Yi Nian, Zenan Sun, Cui Tao
Graph representation learning (GRL) has emerged as a pivotal field that has contributed significantly to breakthroughs in various fields, including biomedicine.
no code implementations • 21 Mar 2023 • Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao
Model card reports provide a transparent description of machine learning models which includes information about their evaluation, limitations, intended use, etc.
no code implementations • 17 Feb 2022 • Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Yong Chen, Cui Tao
The 1, 672, 110 filtered triples were used to train with knowledge graph completion algorithms (i. e., TransE, DistMult, and ComplEx) to predict candidates that might be helpful for AD treatment or prevention.
no code implementations • 13 Sep 2021 • Yi Nian, Jingcheng Du, Larry Bu, Fang Li, Xinyue Hu, Yuji Zhang, Cui Tao
To date, there are no effective treatments for most neurodegenerative diseases.
no code implementations • 4 Aug 2020 • Mohcine Madkour, Keith Butler, Eric Mercer, Ali Bahrami, Cui Tao
As a first step, we illustrate how graphical class and state diagrams from UML can be developed and critiqued with subject matter experts to serve as specifications of the conceptual work product of case management.
no code implementations • WS 2020 • Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao
ABSTRACT: HIV (human immunodeficiency virus) can damage a human{'}s immune system and cause Acquired Immunodeficiency Syndrome (AIDS) which could lead to severe outcomes, including death.
1 code implementation • 22 May 2020 • Laila Rasmy, Yang Xiang, Ziqian Xie, Cui Tao, Degui Zhi
Deep learning (DL) based predictive models from electronic health records (EHR) deliver impressive performance in many clinical tasks.
no code implementations • 6 Jul 2019 • Hansi Zhang, Christopher Wheldon, Adam G. Dunn, Cui Tao, Jinhai Huo, Rui Zhang, Mattia Prosperi, Yi Guo, Jiang Bian
We applied topic modeling to discover major themes, and subsequently explored the associations between the topics learned from consumers' discussions and the responses of HPV-related questions in the Health Information National Trends Survey (HINTS).
no code implementations • 6 Jul 2019 • Jingcheng Du, Chongliang Luo, Qiang Wei, Yong Chen, Cui Tao
In this study, we proposed a convolutional neural network model for gender prediction using English Twitter text as input.
4 code implementations • 13 Nov 2018 • Jingcheng Du, Qingyu Chen, Yifan Peng, Yang Xiang, Cui Tao, Zhiyong Lu
Due to this nature, the multi-label text classification task is often considered to be more challenging compared to the binary or multi-class text classification problems.