1 code implementation • 7 Sep 2024 • Shuchang Ye, Mingyuan Meng, Mingjian Li, Dagan Feng, Jinman Kim
Segmentation of infected areas in chest X-rays is pivotal for facilitating the accurate delineation of pulmonary structures and pathological anomalies.
no code implementations • 2 Aug 2024 • Xiaoshuang Li, Mingyuan Meng, Zimo Huang, Lei Bi, Eduardo Delamare, Dagan Feng, Bin Sheng, Jinman Kim
Panoramic X-ray (PX) is a prevalent modality in dental practice for its wide availability and low cost.
1 code implementation • CVPR 2024 • Mingyuan Meng, Dagan Feng, Lei Bi, Jinman Kim
However, due to the high computation/memory loads of self-attention, transformers are typically used at downsampled feature resolutions and cannot capture fine-grained long-range dependence at the full image resolution.
no code implementations • 24 Jan 2024 • Shuchang Ye, Mingyuan Meng, Mingjian Li, Dagan Feng, Usman Naseem, Jinman Kim
Automated medical report generation has the potential to significantly reduce the workload associated with the time-consuming process of medical reporting.
1 code implementation • 28 Nov 2023 • Mingyuan Meng, Yuxin Xue, Dagan Feng, Lei Bi, Jinman Kim
This textural information is crucial for medical dense prediction as it can differentiate the subtle human anatomy in medical images.
1 code implementation • 11 Sep 2023 • Mingyuan Meng, Michael Fulham, Dagan Feng, Lei Bi, Jinman Kim
However, DNN-based registration needs to explore the spatial information of each image and fuse this information to characterize spatial correspondence.
1 code implementation • 7 Jul 2023 • Mingyuan Meng, Lei Bi, Michael Fulham, Dagan Feng, Jinman Kim
Recently, Non-Iterative Coarse-to-finE (NICE) registration methods have been proposed to perform coarse-to-fine registration in a single network and showed advantages in both registration accuracy and runtime.
1 code implementation • 7 Jul 2023 • Mingyuan Meng, Lei Bi, Michael Fulham, Dagan Feng, Jinman Kim
In view of this, we propose a merging-diverging learning framework for survival prediction from multi-modality images.
2 code implementations • 17 May 2023 • Mingyuan Meng, Bingxin Gu, Michael Fulham, Shaoli Song, Dagan Feng, Lei Bi, Jinman Kim
Instead of adopting MTL, we propose a novel Segmentation-to-Survival Learning (SSL) strategy, where our AdaMSS is trained for tumor segmentation and survival prediction sequentially in two stages.
no code implementations • 3 Apr 2023 • Yuxin Xue, Yige Peng, Lei Bi, Dagan Feng, Jinman Kim
We compared our method to the state-of-the-art methods on whole-body PET with different dose reduction factors (DRFs).
no code implementations • 10 Feb 2023 • Wei-Chien Wang, Euijoon Ahn, Dagan Feng, Jinman Kim
Over the last decade, supervised deep learning on manually annotated big data has been progressing significantly on computer vision tasks.
no code implementations • 12 Dec 2022 • Yuan Yuan, Euijoon Ahn, Dagan Feng, Mohamad Khadra, Jinman Kim
However, existing state of the art AI algorithms which are based on deep learning technology are often limited to 2D images that fails to capture inter-slice correlations in 3D volumetric images.
1 code implementation • 15 Nov 2022 • Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim
In this study, we focus on brain tumor sequence registration between pre-operative and follow-up Magnetic Resonance Imaging (MRI) scans of brain glioma patients, in the context of Brain Tumor Sequence Registration challenge (BraTS-Reg 2022).
2 code implementations • 10 Nov 2022 • Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim
Recently, deep learning methods have been proposed to perform end-to-end outcome prediction so as to remove the reliance on manual segmentation.
1 code implementation • 16 Sep 2022 • Yige Peng, Jinman Kim, Dagan Feng, Lei Bi
In this study, we introduce a false positive reduction network to overcome this limitation.
1 code implementation • 25 Jun 2022 • Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim
Recently, iterative deep registration methods have been used to alleviate this limitation, where the transformations are iteratively learned in a coarse-to-fine manner.
no code implementations • 24 May 2022 • Yu-Xuan Chen, Dagan Feng, Hong-Bin Shen
Rigid image alignment is a fundamental task in computer vision, while the traditional algorithms are either too sensitive to noise or time-consuming.
no code implementations • 13 Dec 2021 • Bhakti Baheti, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey Rudie, Syed Abidi, Mina Mousa, Javier Villanueva-Meyer, Brandon K. K. Fields, Florian Kofler, Russell Takeshi Shinohara, Juan Eugenio Iglesias, Tony C. W. Mok, Albert C. S. Chung, Marek Wodzinski, Artur Jurgas, Niccolo Marini, Manfredo Atzori, Henning Muller, Christoph Grobroehmer, Hanna Siebert, Lasse Hansen, Mattias P. Heinrich, Luca Canalini, Jan Klein, Annika Gerken, Stefan Heldmann, Alessa Hering, Horst K. Hahn, Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim, Ramy A. Zeineldin, Mohamed E. Karar, Franziska Mathis-Ullrich, Oliver Burgert, Javid Abderezaei, Aymeric Pionteck, Agamdeep Chopra, Mehmet Kurt, Kewei Yan, Yonghong Yan, Zhe Tang, Jianqiang Ma, Sahar Almahfouz Nasser, Nikhil Cherian Kurian, Mohit Meena, Saqib Shamsi, Amit Sethi, Nicholas J. Tustison, Brian B. Avants, Philip Cook, James C. Gee, Lin Tian, Hastings Greer, Marc Niethammer, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Stergios Christodoulidis, Theo Estiene, Maria Vakalopoulou, Nikos Paragios, Daniel S. Marcus, Christos Davatzikos, Aristeidis Sotiras, Bjoern Menze, Spyridon Bakas, Diana Waldmannstetter
Registration of longitudinal brain MRI scans containing pathologies is challenging due to dramatic changes in tissue appearance.
2 code implementations • 30 Sep 2021 • Yuyu Guo, Lei Bi, Dongming Wei, Liyun Chen, Zhengbin Zhu, Dagan Feng, Ruiyan Zhang, Qian Wang, Jinman Kim
In the first stage, we process the raw dense image to extract sparse landmarks to represent the target organ anatomical topology and discard the redundant information that is unnecessary for motion estimation.
1 code implementation • 11 Jul 2021 • Euijoon Ahn, Dagan Feng, Jinman Kim
Hence, we propose a new spatial guided self-supervised clustering network (SGSCN) for medical image segmentation, where we introduce multiple loss functions designed to aid in grouping image pixels that are spatially connected and have similar feature representations.
no code implementations • 23 Apr 2021 • Yige Peng, Lei Bi, Ashnil Kumar, Michael Fulham, Dagan Feng, Jinman Kim
Most CNNs are designed for single-modality imaging data (CT or PET alone) and do not exploit the information embedded in PET-CT where there is a combination of an anatomical and functional imaging modality.
no code implementations • 12 Jul 2020 • Yige Peng, Lei Bi, Michael Fulham, Dagan Feng, Jinman Kim
'Radiomics' is a method that extracts mineable quantitative features from radiographic images.
1 code implementation • CVPR 2020 • Yuyu Guo, Lei Bi, Euijoon Ahn, Dagan Feng, Qian Wang, Jinman Kim
SVIN introduces dual networks: first is the spatiotemporal motion network that leverages the 3D convolutional neural network (CNN) for unsupervised parametric volumetric registration to derive spatiotemporal motion field from two-image volumes; the second is the sequential volumetric interpolation network, which uses the derived motion field to interpolate image volumes, together with a new regression-based module to characterize the periodic motion cycles in functional organ structures.
no code implementations • 21 Sep 2019 • Zehui Yao, Boyan Zhang, Zhiyong Wang, Wanli Ouyang, Dong Xu, Dagan Feng
For example, given two image domains $X_1$ and $X_2$ with certain attributes, the intersection $X_1 \cap X_2$ denotes a new domain where images possess the attributes from both $X_1$ and $X_2$ domains.
no code implementations • 7 Jun 2019 • Euijoon Ahn, Ashnil Kumar, Dagan Feng, Michael Fulham, Jinman Kim
Hence, we propose a new unsupervised feature learning method that learns feature representations to then differentiate dissimilar medical images using an ensemble of different convolutional neural networks (CNNs) and K-means clustering.
no code implementations • 15 Mar 2019 • Euijoon Ahn, Ashnil Kumar, Dagan Feng, Michael Fulham, Jinman Kim
The accuracy and robustness of image classification with supervised deep learning are dependent on the availability of large-scale, annotated training data.
no code implementations • 13 Feb 2019 • Lei Bi, Yuyu Guo, Qian Wang, Dagan Feng, Michael Fulham, Jinman Kim
Our approach leverages deep residual architectures and FCNs and learns and infers the location of the optic cup and disk in a step-wise manner with fine-grained details.
1 code implementation • 5 Oct 2018 • Ashnil Kumar, Michael Fulham, Dagan Feng, Jinman Kim
Our aim is to improve fusion of the complementary information in multi-modality PET-CT with a new supervised convolutional neural network (CNN) that learns to fuse complementary information for multi-modality medical image analysis.
no code implementations • 23 Jul 2018 • Lei Bi, Dagan Feng, Jinman Kim
Segmentation of skin lesions is considered as an important step in computer aided diagnosis (CAD) for automated melanoma diagnosis.
no code implementations • 18 Jul 2018 • Haozhe Jia, Yang song, Donghao Zhang, Heng Huang, Dagan Feng, Michael Fulham, Yong Xia, Weidong Cai
In this paper, we propose a 3D Global Convolutional Adversarial Network (3D GCA-Net) to address efficient prostate MR volume segmentation.
no code implementations • 16 Jul 2018 • Euijoon Ahn, Jinman Kim, Ashnil Kumar, Michael Fulham, Dagan Feng
The availability of large-scale annotated image datasets and recent advances in supervised deep learning methods enable the end-to-end derivation of representative image features that can impact a variety of image analysis problems.
2 code implementations • 31 Jul 2017 • Lei Bi, Jinman Kim, Ashnil Kumar, Dagan Feng, Michael Fulham
Positron emission tomography (PET) image synthesis plays an important role, which can be used to boost the training data for computer aided diagnosis systems.
no code implementations • 10 Apr 2017 • Lei Bi, Jinman Kim, Ashnil Kumar, Dagan Feng
Recently, deep learning methods based on fully convolutional networks (FCNs) have been successful in many segmentation problems primarily because they leverage a large labelled dataset to hierarchically learn the features that best correspond to the shallow visual appearance as well as the deep semantics of the areas to be segmented.
no code implementations • 12 Mar 2017 • Lei Bi, Jinman Kim, Euijoon Ahn, Dagan Feng
Dermoscopy images play an important role in the non-invasive early detection of melanoma [1].
no code implementations • 24 Aug 2015 • Si-Qi Liu, Sidong Liu, Sonia Pujol, Ron Kikinis, Dagan Feng, Michael Fulham, Weidong Cai
We present a longitudinal MR simulation framework which simulates the future neurodegenerative progression by outputting the predicted follow-up MR image and the voxel-based morphometry (VBM) map.