Search Results for author: Daniel Sonntag

Found 34 papers, 5 papers with code

Towards a New Science of a Clinical Data Intelligence

no code implementations17 Nov 2013 Volker Tresp, Sonja Zillner, Maria J. Costa, Yi Huang, Alexander Cavallaro, Peter A. Fasching, Andre Reis, Martin Sedlmayr, Thomas Ganslandt, Klemens Budde, Carl Hinrichs, Danilo Schmidt, Philipp Daumke, Daniel Sonntag, Thomas Wittenberg, Patricia G. Oppelt, Denis Krompass

We argue that a science of a Clinical Data Intelligence is sensible in the context of a Big Data analysis, i. e., with data from many patients and with complete patient information.

A Multimodal Dialogue System for Medical Decision Support inside Virtual Reality

no code implementations WS 2017 Alex Prange, er, Margarita Chikobava, Peter Poller, Michael Barz, Daniel Sonntag

We present a multimodal dialogue system that allows doctors to interact with a medical decision support system in virtual reality (VR).

A Survey on Deep Learning Toolkits and Libraries for Intelligent User Interfaces

no code implementations13 Mar 2018 Jan Zacharias, Michael Barz, Daniel Sonntag

This paper provides an overview of prominent deep learning toolkits and, in particular, reports on recent publications that contributed open source software for implementing tasks that are common in intelligent user interfaces (IUI).

A categorisation and implementation of digital pen features for behaviour characterisation

1 code implementation1 Oct 2018 Alexander Prange, Michael Barz, Daniel Sonntag

In this paper we provide a categorisation and implementation of digital ink features for behaviour characterisation.

Interactive Cognitive Assessment Tools: A Case Study on Digital Pens for the Clinical Assessment of Dementia

no code implementations11 Oct 2018 Daniel Sonntag

Interactive cognitive assessment tools may be valuable for doctors and therapists to reduce costs and improve quality in healthcare systems.

A CNN toolbox for skin cancer classification

no code implementations21 Aug 2019 Fabrizio Nunnari, Daniel Sonntag

We describe a software toolbox for the configuration of deep neural networks in the domain of skin cancer classification.

AutoML Classification +3

Incremental Improvement of a Question Answering System by Re-ranking Answer Candidates using Machine Learning

no code implementations27 Aug 2019 Michael Barz, Daniel Sonntag

Our contributions are: (1) we generate a QA training corpus starting from 877 answers from the customer care domain of T-Mobile Austria, (2) we implement a state-of-the-art QA pipeline using neural sentence embeddings that encode queries in the same space than the answer index, and (3) we evaluate the QA pipeline and our re-ranking approach using a separately provided test set.

Answer Selection BIG-bench Machine Learning +3

The Skincare project, an interactive deep learning system for differential diagnosis of malignant skin lesions. Technical Report

no code implementations19 May 2020 Daniel Sonntag, Fabrizio Nunnari, Hans-Jürgen Profitlich

However, the main contribution is a diagnostic and decision support system in dermatology for patients and doctors, an interactive deep learning system for differential diagnosis of malignant skin lesions.

A Competitive Deep Neural Network Approach for the ImageCLEFmed Caption 2020 Task

no code implementations11 Jul 2020 Marimuthu Kalimuthu, Fabrizio Nunnari, Daniel Sonntag

The aim of ImageCLEFmed Caption task is to develop a system that automatically labels radiology images with relevant medical concepts.

TATL: Task Agnostic Transfer Learning for Skin Attributes Detection

no code implementations4 Apr 2021 Duy M. H. Nguyen, Thu T. Nguyen, Huong Vu, Quang Pham, Manh-Duy Nguyen, Binh T. Nguyen, Daniel Sonntag

Existing skin attributes detection methods usually initialize with a pre-trained Imagenet network and then fine-tune on a medical target task.

Attribute Transfer Learning

A Case Study on Pros and Cons of Regular Expression Detection and Dependency Parsing for Negation Extraction from German Medical Documents. Technical Report

no code implementations20 May 2021 Hans-Jürgen Profitlich, Daniel Sonntag

We describe our work on information extraction in medical documents written in German, especially detecting negations using an architecture based on the UIMA pipeline.

Dependency Parsing Negation

LMGP: Lifted Multicut Meets Geometry Projections for Multi-Camera Multi-Object Tracking

no code implementations CVPR 2022 Duy M. H. Nguyen, Roberto Henschel, Bodo Rosenhahn, Daniel Sonntag, Paul Swoboda

Multi-Camera Multi-Object Tracking is currently drawing attention in the computer vision field due to its superior performance in real-world applications such as video surveillance in crowded scenes or in wide spaces.

Multi-Object Tracking Multiple Object Tracking

A survey on improving NLP models with human explanations

no code implementations LNLS (ACL) 2022 Mareike Hartmann, Daniel Sonntag

Training a model with access to human explanations can improve data efficiency and model performance on in- and out-of-domain data.

Joint Self-Supervised Image-Volume Representation Learning with Intra-Inter Contrastive Clustering

no code implementations4 Dec 2022 Duy M. H. Nguyen, Hoang Nguyen, Mai T. N. Truong, Tri Cao, Binh T. Nguyen, Nhat Ho, Paul Swoboda, Shadi Albarqouni, Pengtao Xie, Daniel Sonntag

Recent breakthroughs in self-supervised learning (SSL) offer the ability to overcome the lack of labeled training samples by learning feature representations from unlabeled data.

Brain Segmentation Clustering +3

Cross-lingual German Biomedical Information Extraction: from Zero-shot to Human-in-the-Loop

no code implementations24 Jan 2023 Siting Liang, Mareike Hartmann, Daniel Sonntag

This paper presents our project proposal for extracting biomedical information from German clinical narratives with limited amounts of annotations.

Active Learning Transfer Learning

Fine-tuning of explainable CNNs for skin lesion classification based on dermatologists' feedback towards increasing trust

no code implementations3 Apr 2023 Md Abdul Kadir, Fabrizio Nunnari, Daniel Sonntag

In this paper, we propose a CNN fine-tuning method which enables users to give simultaneous feedback on two outputs: the classification itself and the visual explanation for the classification.

Classification Lesion Classification +1

A Virtual Reality Tool for Representing, Visualizing and Updating Deep Learning Models

no code implementations24 May 2023 Hannes Kath, Bengt Lüers, Thiago S. Gouvêa, Daniel Sonntag

Deep learning is ubiquitous, but its lack of transparency limits its impact on several potential application areas.

A Deep Generative Model for Interactive Data Annotation through Direct Manipulation in Latent Space

no code implementations24 May 2023 Hannes Kath, Thiago S. Gouvêa, Daniel Sonntag

The impact of machine learning (ML) in many fields of application is constrained by lack of annotated data.

Towards Adaptable and Interactive Image Captioning with Data Augmentation and Episodic Memory

no code implementations6 Jun 2023 Aliki Anagnostopoulou, Mareike Hartmann, Daniel Sonntag

Interactive machine learning (IML) is a beneficial learning paradigm in cases of limited data availability, as human feedback is incrementally integrated into the training process.

Continual Learning Data Augmentation +1

Putting Humans in the Image Captioning Loop

no code implementations6 Jun 2023 Aliki Anagnostopoulou, Mareike Hartmann, Daniel Sonntag

Image Captioning (IC) models can highly benefit from human feedback in the training process, especially in cases where data is limited.

Image Captioning

LVM-Med: Learning Large-Scale Self-Supervised Vision Models for Medical Imaging via Second-order Graph Matching

1 code implementation NeurIPS 2023 Duy M. H. Nguyen, Hoang Nguyen, Nghiem T. Diep, Tan N. Pham, Tri Cao, Binh T. Nguyen, Paul Swoboda, Nhat Ho, Shadi Albarqouni, Pengtao Xie, Daniel Sonntag, Mathias Niepert

While pre-trained deep networks on ImageNet and vision-language foundation models trained on web-scale data are prevailing approaches, their effectiveness on medical tasks is limited due to the significant domain shift between natural and medical images.

Contrastive Learning Diabetic Retinopathy Grading +3

Harmonizing Feature Attributions Across Deep Learning Architectures: Enhancing Interpretability and Consistency

no code implementations5 Jul 2023 Md Abdul Kadir, Gowtham Krishna Addluri, Daniel Sonntag

Ensuring the trustworthiness and interpretability of machine learning models is critical to their deployment in real-world applications.

EdgeAL: An Edge Estimation Based Active Learning Approach for OCT Segmentation

1 code implementation20 Jul 2023 Md Abdul Kadir, Hasan Md Tusfiqur Alam, Daniel Sonntag

However, selecting data for annotation remains a challenging problem due to the limited information available on unseen data.

Active Learning Superpixels

Structure-Aware E(3)-Invariant Molecular Conformer Aggregation Networks

no code implementations3 Feb 2024 Duy M. H. Nguyen, Nina Lukashina, Tai Nguyen, An T. Le, TrungTin Nguyen, Nhat Ho, Jan Peters, Daniel Sonntag, Viktor Zaverkin, Mathias Niepert

Contrary to prior work, we propose a novel 2D--3D aggregation mechanism based on a differentiable solver for the \emph{Fused Gromov-Wasserstein Barycenter} problem and the use of an efficient online conformer generation method based on distance geometry.

Molecular Property Prediction Property Prediction

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