1 code implementation • bioRxiv 2024 • Thomas Hayes, Roshan Rao, Halil Akin, Nicholas J. Sofroniew, Deniz Oktay, Zeming Lin, Robert Verkuil, Vincent Q. Tran, Jonathan Deaton, Alexander Rives
Among the generations that we synthesized, we found a bright fluorescent protein at a far distance (58% sequence identity) from known fluorescent proteins, which we estimate is equivalent to simulating five hundred million years of evolution.
no code implementations • 29 Jun 2024 • Olga Solodova, Nick Richardson, Deniz Oktay, Ryan P. Adams
Message passing graph neural networks (GNNs) would appear to be powerful tools to learn distributed algorithms via gradient descent, but generate catastrophically incorrect predictions when nodes update asynchronously during inference.
no code implementations • 31 Jan 2023 • Deniz Oktay, Mehran Mirramezani, Eder Medina, Ryan P. Adams
In this work, we seek to develop machine learning analogs of this process, in which we jointly learn the morphology of complex nonlinear elastic solids along with a deep neural network to control it.
no code implementations • 3 Nov 2022 • Tian Qin, Alex Beatson, Deniz Oktay, Nick McGreivy, Ryan P. Adams
Partial differential equations (PDEs) are often computationally challenging to solve, and in many settings many related PDEs must be be solved either at every timestep or for a variety of candidate boundary conditions, parameters, or geometric domains.
1 code implementation • ICLR 2021 • Deniz Oktay, Nick McGreivy, Joshua Aduol, Alex Beatson, Ryan P. Adams
The successes of deep learning, variational inference, and many other fields have been aided by specialized implementations of reverse-mode automatic differentiation (AD) to compute gradients of mega-dimensional objectives.
no code implementations • 21 Oct 2019 • Zhe Dong, Deniz Oktay, Ben Poole, Alexander A. Alemi
Certain biological neurons demonstrate a remarkable capability to optimally compress the history of sensory inputs while being maximally informative about the future.
no code implementations • 25 Sep 2019 • Zhe Dong, Deniz Oktay, Ben Poole, Alexander A. Alemi
Certain biological neurons demonstrate a remarkable capability to optimally compress the history of sensory inputs while being maximally informative about the future.
no code implementations • ICLR 2020 • Deniz Oktay, Johannes Ballé, Saurabh Singh, Abhinav Shrivastava
We describe a simple and general neural network weight compression approach, in which the network parameters (weights and biases) are represented in a "latent" space, amounting to a reparameterization.
no code implementations • ICLR 2018 • Deniz Oktay, Carl Vondrick, Antonio Torralba
However, when a layer is removed, the model learns to produce a different image that still looks natural to an adversary, which is possible by removing objects.
no code implementations • CVPR 2016 • Carl Vondrick, Deniz Oktay, Hamed Pirsiavash, Antonio Torralba
In this paper, we introduce the problem of predicting why a person has performed an action in images.