no code implementations • 1 Jan 2023 • Chenyu Xue, Fan Wang, Yuanzhuo Zhu, Hui Li, Deyu Meng, Dinggang Shen, Chunfeng Lian
Deploying reliable deep learning techniques in interdisciplinary applications needs learned models to output accurate and ({even more importantly}) explainable predictions.
no code implementations • 2 Dec 2022 • Yonghao Li, Tao Zhou, Kelei He, Yi Zhou, Dinggang Shen
During the fine-tuning stage, we present a Multi-scale Transformer U-Net (MT-UNet) to synthesize the target-modality images, in which a Dual-scale Selective Fusion (DSF) module is proposed to fully integrate multi-scale features extracted from the encoder of the pre-trained Edge-MAE.
no code implementations • 30 Nov 2022 • Yu Fang, Lanzhuju Mei, Changjian Li, YuAn Liu, Wenping Wang, Zhiming Cui, Dinggang Shen
Cone beam computed tomography (CBCT) has been widely used in clinical practice, especially in dental clinics, while the radiation dose of X-rays when capturing has been a long concern in CBCT imaging.
no code implementations • 22 Oct 2022 • Lin Zhao, Xiao Chen, Eric Z. Chen, Yikang Liu, Dinggang Shen, Terrence Chen, Shanhui Sun
The proposed framework consists of a sampling mask generator for each image contrast and a reconstructor exploiting the inter-contrast correlations with a recurrent structure which enables the information sharing in a holistic way.
1 code implementation • 17 Oct 2022 • Mancheng Meng, Ziyan Wu, Terrence Chen, Xiran Cai, Xiang Sean Zhou, Fan Yang, Dinggang Shen
We categorize scene history information into two types: historical group trajectory and individual-surroundings interaction.
no code implementations • 22 Sep 2022 • Mianxin Liu, Han Zhang, Feng Shi, Dinggang Shen
In this study, we propose a novel framework to perform multiscale FCN analysis for brain disorder diagnosis.
no code implementations • 19 Jul 2022 • Zhenrong Shen, Xi Ouyang, Bin Xiao, Jie-Zhi Cheng, Qian Wang, Dinggang Shen
Moreover, we propose to synthesize nodule CXR images by controlling the disentangled nodule attributes for data augmentation, in order to better compensate for the nodules that are easily missed in the detection task.
no code implementations • 7 Jul 2022 • Xiangxi Meng, Yuning Gu, Yongsheng Pan, Nizhuan Wang, Peng Xue, Mengkang Lu, Xuming He, Yiqiang Zhan, Dinggang Shen
Multi-modal medical image completion has been extensively applied to alleviate the missing modality issue in a wealth of multi-modal diagnostic tasks.
1 code implementation • 25 Jun 2022 • Yiqing Shen, Yulin Luo, Dinggang Shen, Jing Ke
To address the problems, we unify SN and SA with a novel RandStainNA scheme, which constrains variable stain styles in a practicable range to train a stain agnostic deep learning model.
no code implementations • 17 Jun 2022 • Chong Ma, Lin Zhao, Yuzhong Chen, David Weizhong Liu, Xi Jiang, Tuo Zhang, Xintao Hu, Dinggang Shen, Dajiang Zhu, Tianming Liu
In this work, we propose a novel and effective saliency-guided vision transformer (SGT) model to rectify shortcut learning in ViT with the absence of eye-gaze data.
no code implementations • 14 Jun 2022 • Jingyang Zhang, Peng Xue, Ran Gu, Yuning Gu, Mianxin Liu, Yongsheng Pan, Zhiming Cui, Jiawei Huang, Lei Ma, Dinggang Shen
In clinical practice, a segmentation network is often required to continually learn on a sequential data stream from multiple sites rather than a consolidated set, due to the storage cost and privacy restriction.
no code implementations • 25 May 2022 • Chong Ma, Lin Zhao, Yuzhong Chen, Lu Zhang, Zhenxiang Xiao, Haixing Dai, David Liu, Zihao Wu, Zhengliang Liu, Sheng Wang, Jiaxing Gao, Changhe Li, Xi Jiang, Tuo Zhang, Qian Wang, Dinggang Shen, Dajiang Zhu, Tianming Liu
To address this problem, we propose to infuse human experts' intelligence and domain knowledge into the training of deep neural networks.
1 code implementation • 8 May 2022 • Hao Hou, Jun Xu, Yingkun Hou, Xiaotao Hu, Benzheng Wei, Dinggang Shen
To better exploit the powerful generative capability of GAN for real-world face SR, in this paper, we establish two independent degradation branches in the forward and backward cycle-consistent reconstruction processes, respectively, while the two processes share the same restoration branch.
1 code implementation • 19 Apr 2022 • Yue Zhao, Lingming Zhang, Yang Liu, Deyu Meng, Zhiming Cui, Chenqiang Gao, Xinbo Gao, Chunfeng Lian, Dinggang Shen
The state-of-the-art deep learning-based methods often simply concatenate the raw geometric attributes (i. e., coordinates and normal vectors) of mesh cells to train a single-stream network for automatic intra-oral scanner image segmentation.
1 code implementation • 6 Apr 2022 • Sheng Wang, Xi Ouyang, Tianming Liu, Qian Wang, Dinggang Shen
In this paper, we demonstrate that the eye movement of radiologists reading medical images can be a new form of supervision to train the DNN-based computer-aided diagnosis (CAD) system.
no code implementations • 28 Mar 2022 • Ruiyang Zhao, Zhao He, Tao Wang, Suhao Qiu, Pawel Herman, Yanle Hu, Chencheng Zhang, Dinggang Shen, Bomin Sun, Guang-Zhong Yang, Yuan Feng
Here we proposed a convolutional long short-term memory (Conv-LSTM) based recurrent neural network (RNN), or ConvLR, to reconstruct interventional images with golden-angle radial sampling.
no code implementations • 24 Feb 2022 • Kelei He, Chen Gan, Zhuoyuan Li, Islem Rekik, Zihao Yin, Wen Ji, Yang Gao, Qian Wang, Junfeng Zhang, Dinggang Shen
Transformers have dominated the field of natural language processing, and recently impacted the computer vision area.
no code implementations • 12 Jan 2022 • Zixu Zhuang, Liping Si, Sheng Wang, Kai Xuan, Xi Ouyang, Yiqiang Zhan, Zhong Xue, Lichi Zhang, Dinggang Shen, Weiwu Yao, Qian Wang
Knee osteoarthritis (OA) is the most common osteoarthritis and a leading cause of disability.
1 code implementation • 21 Nov 2021 • Zheren Li, Zhiming Cui, Sheng Wang, Yuji Qi, Xi Ouyang, Qitian Chen, Yuezhi Yang, Zhong Xue, Dinggang Shen, Jie-Zhi Cheng
Specifically, the backbone network is firstly trained with a multi-style and multi-view unsupervised self-learning scheme for the embedding of invariant features to various vendor-styles.
no code implementations • 11 Nov 2021 • Junwei Yang, Xiao-Xin Li, Feihong Liu, Dong Nie, Pietro Lio, Haikun Qi, Dinggang Shen
Recent studies on T1-assisted MRI reconstruction for under-sampled images of other modalities have demonstrated the potential of further accelerating MRI acquisition of other modalities.
no code implementations • 9 Oct 2021 • Siyuan Liu, Kim-Han Thung, Liangqiong Qu, Weili Lin, Dinggang Shen, Pew-Thian Yap
Retrospective artifact correction (RAC) improves image quality post acquisition and enhances image usability.
1 code implementation • 6 Oct 2021 • Alaa Bessadok, Ahmed Nebli, Mohamed Ali Mahjoub, Gang Li, Weili Lin, Dinggang Shen, Islem Rekik
To the best of our knowledge, this is the first teacher-student architecture tailored for brain graph multi-trajectory growth prediction that is based on few-shot learning and generalized to graph neural networks (GNNs).
no code implementations • 24 Sep 2021 • Tai-Hsien Wu, Chunfeng Lian, Sanghee Lee, Matthew Pastewait, Christian Piers, Jie Liu, Fang Wang, Li Wang, Chiung-Ying Chiu, Wenchi Wang, Christina Jackson, Wei-Lun Chao, Dinggang Shen, Ching-Chang Ko
Our TS-MDL first adopts an end-to-end \emph{i}MeshSegNet method (i. e., a variant of the existing MeshSegNet with both improved accuracy and efficiency) to label each tooth on the downsampled scan.
no code implementations • 11 Sep 2021 • Deqiang Xiao, Hannah Deng, Tianshu Kuang, Lei Ma, Qin Liu, Xu Chen, Chunfeng Lian, Yankun Lang, Daeseung Kim, Jaime Gateno, Steve Guofang Shen, Dinggang Shen, Pew-Thian Yap, James J. Xia
In the training stage, the simulator maps jaw deformities of a patient bone to a normal bone to generate a simulated deformed bone.
no code implementations • 8 Sep 2021 • Geng-Xin Xu, Chen Liu, Jun Liu, Zhongxiang Ding, Feng Shi, Man Guo, Wei Zhao, Xiaoming Li, Ying WEI, Yaozong Gao, Chuan-Xian Ren, Dinggang Shen
Particularly, we propose a domain translator and align the heterogeneous data to the estimated class prototypes (i. e., class centers) in a hyper-sphere manifold.
1 code implementation • 12 Aug 2021 • Kai Xuan, Lei Xiang, Xiaoqian Huang, Lichi Zhang, Shu Liao, Dinggang Shen, Qian Wang
However, we find that the performance of the aforementioned multi-modal reconstruction can be negatively affected by subtle spatial misalignment between different modalities, which is actually common in clinical practice.
no code implementations • MICCAI Workshop COMPAY 2021 • Xiaodan Xing, Yixin Ma, Lei Jin, Tianyang Sun, Zhong Xue, Feng Shi, Jinsong Wu, Dinggang Shen
The proposed method is featured by a pyramid graph structure and an attention-based multi-instance learning strategy.
no code implementations • MICCAI Workshop COMPAY 2021 • Mengkang Lu, Yongsheng Pan, Dong Nie, Feng Shi, Feihong Liu, Yong Xia, Dinggang Shen
In this paper, we propose a Sparse-attention based Multiple Instance contrastive LEarning (SMILE) method for glioma sub-type classification.
no code implementations • 29 Jun 2021 • Zhiyang Lu, Zheng Li, Jun Wang, Jun Shi, Dinggang Shen
To this end, we propose a novel Two-stage Self-supervised Cycle-consistency Network (TSCNet) for MR slice interpolation, in which a two-stage self-supervised learning (SSL) strategy is developed for unsupervised DL network training.
no code implementations • CVPR 2021 • Lingming Zhang, Yue Zhao, Deyu Meng, Zhiming Cui, Chenqiang Gao, Xinbo Gao, Chunfeng Lian, Dinggang Shen
State-of-the-art methods directly concatenate the raw attributes of 3D inputs, namely coordinates and normal vectors of mesh cells, to train a single-stream network for fully-automated tooth segmentation.
1 code implementation • 17 May 2021 • Kelei He, Wen Ji, Tao Zhou, Zhuoyuan Li, Jing Huo, Xin Zhang, Yang Gao, Dinggang Shen, Bing Zhang, Junfeng Zhang
Specifically, a bidirectional image synthesis and segmentation module is proposed to segment the brain tumor using the intermediate data distributions generated for the two domains, which includes an image-to-image translator and a shared-weighted segmentation network.
no code implementations • 7 Feb 2021 • Zekun Li, Wei Zhao, Feng Shi, Lei Qi, Xingzhi Xie, Ying WEI, Zhongxiang Ding, Yang Gao, Shangjie Wu, Jun Liu, Yinghuan Shi, Dinggang Shen
How to fast and accurately assess the severity level of COVID-19 is an essential problem, when millions of people are suffering from the pandemic around the world.
no code implementations • 26 Dec 2020 • Lingming Zhang, Yue Zhao, Deyu Meng, Zhiming Cui, Chenqiang Gao, Xinbo Gao, Chunfeng Lian, Dinggang Shen
State-of-the-art methods directly concatenate the raw attributes of 3D inputs, namely coordinates and normal vectors of mesh cells, to train a single-stream network for fully-automated tooth segmentation.
no code implementations • 15 Sep 2020 • Xuyun Wen, Liming Hsu, Weili Lin, Han Zhang, Dinggang Shen
By applying our proposed methodological framework on the collected longitudinal infant dataset, we provided the first evidence that, in the first 2 years of life, the brain functional network is co-evolved at different scales, where each scale displays the unique reconfiguration pattern in terms of modular organization.
no code implementations • 6 Sep 2020 • Peirong Liu, Zhengwang Wu, Gang Li, Pew-Thian Yap, Dinggang Shen
Charting cortical growth trajectories is of paramount importance for understanding brain development.
no code implementations • 31 Jul 2020 • Yinghuan Shi, Wanqi Yang, Kim-Han Thung, Hao Wang, Yang Gao, Yang Pan, Li Zhang, Dinggang Shen
Then, we build a novel computer-aided prescription model by learning the relation between observed symptoms and prescription drug.
no code implementations • 4 Jul 2020 • Yue Sun, Kun Gao, Zhengwang Wu, Zhihao Lei, Ying WEI, Jun Ma, Xiaoping Yang, Xue Feng, Li Zhao, Trung Le Phan, Jitae Shin, Tao Zhong, Yu Zhang, Lequan Yu, Caizi Li, Ramesh Basnet, M. Omair Ahmad, M. N. S. Swamy, Wenao Ma, Qi Dou, Toan Duc Bui, Camilo Bermudez Noguera, Bennett Landman, Ian H. Gotlib, Kathryn L. Humphreys, Sarah Shultz, Longchuan Li, Sijie Niu, Weili Lin, Valerie Jewells, Gang Li, Dinggang Shen, Li Wang
Deep learning-based methods have achieved state-of-the-art performance; however, one of major limitations is that the learning-based methods may suffer from the multi-site issue, that is, the models trained on a dataset from one site may not be applicable to the datasets acquired from other sites with different imaging protocols/scanners.
no code implementations • 21 May 2020 • Kelei He, Chunfeng Lian, Bing Zhang, Xin Zhang, Xiaohuan Cao, Dong Nie, Yang Gao, Junfeng Zhang, Dinggang Shen
In this paper, we tackle the challenging task of prostate segmentation in CT images by a two-stage network with 1) the first stage to fast localize, and 2) the second stage to accurately segment the prostate.
1 code implementation • 19 May 2020 • Dongming Wei, Sahar Ahmad, Yunzhi Huang, Lei Ma, Zhengwang Wu, Gang Li, Li Wang, Qian Wang, Pew-Thian Yap, Dinggang Shen
Deformable image registration is fundamental to longitudinal and population analysis.
1 code implementation • 19 May 2020 • Jiayu Huo, Liping Si, Xi Ouyang, Kai Xuan, Weiwu Yao, Zhong Xue, Qian Wang, Dinggang Shen, Lichi Zhang
With dual-consistency checking of the attention in the lesion classification and localization, the two networks can gradually optimize the attention distribution and improve the performance of each other, whereas the training relies on partially labeled data only and follows the semi-supervised manner.
no code implementations • 15 May 2020 • Kelei He, Chunfeng Lian, Ehsan Adeli, Jing Huo, Yang Gao, Bing Zhang, Junfeng Zhang, Dinggang Shen
Therefore, the proposed network has a dual-branch architecture that tackles two tasks: 1) a segmentation sub-network aiming to generate the prostate segmentation, and 2) a voxel-metric learning sub-network aiming to improve the quality of the learned feature space supervised by a metric loss.
no code implementations • 8 May 2020 • Kelei He, Wei Zhao, Xingzhi Xie, Wen Ji, Mingxia Liu, Zhenyu Tang, Feng Shi, Yang Gao, Jun Liu, Junfeng Zhang, Dinggang Shen
Considering that only a few infection regions in a CT image are related to the severity assessment, we first represent each input image by a bag that contains a set of 2D image patches (with each cropped from a specific slice).
no code implementations • 7 May 2020 • Donglin Di, Feng Shi, Fuhua Yan, Liming Xia, Zhanhao Mo, Zhongxiang Ding, Fei Shan, Shengrui Li, Ying WEI, Ying Shao, Miaofei Han, Yaozong Gao, He Sui, Yue Gao, Dinggang Shen
The main challenge in early screening is how to model the confusing cases in the COVID-19 and CAP groups, with very similar clinical manifestations and imaging features.
no code implementations • 7 May 2020 • Liang Sun, Zhanhao Mo, Fuhua Yan, Liming Xia, Fei Shan, Zhongxiang Ding, Wei Shao, Feng Shi, Huan Yuan, Huiting Jiang, Dijia Wu, Ying WEI, Yaozong Gao, Wanchun Gao, He Sui, Daoqiang Zhang, Dinggang Shen
We evaluated our proposed AFS-DF on COVID-19 dataset with 1495 patients of COVID-19 and 1027 patients of community acquired pneumonia (CAP).
no code implementations • 7 May 2020 • Xiaofeng Zhu, Bin Song, Feng Shi, Yanbo Chen, Rongyao Hu, Jiangzhang Gan, Wenhai Zhang, Man Li, Liye Wang, Yaozong Gao, Fei Shan, Dinggang Shen
To our knowledge, this study is the first work to predict the disease progression and the conversion time, which could help clinicians to deal with the potential severe cases in time or even save the patients' lives.
no code implementations • 6 May 2020 • Hengyuan Kang, Liming Xia, Fuhua Yan, Zhibin Wan, Feng Shi, Huan Yuan, Huiting Jiang, Dijia Wu, He Sui, Changqing Zhang, Dinggang Shen
In this study, we propose to conduct the diagnosis of COVID-19 with a series of features extracted from CT images.
no code implementations • 6 May 2020 • Xi Ouyang, Jiayu Huo, Liming Xia, Fei Shan, Jun Liu, Zhanhao Mo, Fuhua Yan, Zhongxiang Ding, Qi Yang, Bin Song, Feng Shi, Huan Yuan, Ying WEI, Xiaohuan Cao, Yaozong Gao, Dijia Wu, Qian Wang, Dinggang Shen
To this end, we develop a dual-sampling attention network to automatically diagnose COVID- 19 from the community acquired pneumonia (CAP) in chest computed tomography (CT).
1 code implementation • 6 Apr 2020 • Feng Shi, Jun Wang, Jun Shi, Ziyan Wu, Qian Wang, Zhenyu Tang, Kelei He, Yinghuan Shi, Dinggang Shen
In this review paper, we thus cover the entire pipeline of medical imaging and analysis techniques involved with COVID-19, including image acquisition, segmentation, diagnosis, and follow-up.
1 code implementation • 27 Mar 2020 • Kai Xuan, Liping Si, Lichi Zhang, Zhong Xue, Yining Jiao, Weiwu Yao, Dinggang Shen, Dijia Wu, Qian Wang
In this work, we propose a novel deep-learning-based super-resolution algorithm to generate high-resolution (HR) MR images with small slice spacing from low-resolution (LR) inputs of large slice spacing.
no code implementations • 26 Mar 2020 • Zhenyu Tang, Wei Zhao, Xingzhi Xie, Zheng Zhong, Feng Shi, Jun Liu, Dinggang Shen
Purpose: Using machine learning method to realize automatic severity assessment (non-severe or severe) of COVID-19 based on chest CT images, and to explore the severity-related features from the resulting assessment model.
no code implementations • 22 Mar 2020 • Feng Shi, Liming Xia, Fei Shan, Dijia Wu, Ying WEI, Huan Yuan, Huiting Jiang, Yaozong Gao, He Sui, Dinggang Shen
The worldwide spread of coronavirus disease (COVID-19) has become a threatening risk for global public health.
1 code implementation • 10 Mar 2020 • Fei Shan, Yaozong Gao, Jun Wang, Weiya Shi, Nannan Shi, Miaofei Han, Zhong Xue, Dinggang Shen, Yuxin Shi
The performance of the system was evaluated by comparing the automatically segmented infection regions with the manually-delineated ones on 300 chest CT scans of 300 COVID-19 patients.
no code implementations • 25 Feb 2020 • Yoonmi Hong, Wei-Tang Chang, Geng Chen, Ye Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap
Diffusion MRI (dMRI) is a unique imaging technique for in vivo characterization of tissue microstructure and white matter pathways.
no code implementations • 22 Feb 2020 • Tiexin Qin, Ziyuan Wang, Kelei He, Yinghuan Shi, Yang Gao, Dinggang Shen
Conventional data augmentation realized by performing simple pre-processing operations (\eg, rotation, crop, \etc) has been validated for its advantage in enhancing the performance for medical image segmentation.
1 code implementation • 18 Oct 2019 • Yinghuan Shi, Tiexin Qin, Yong liu, Jiwen Lu, Yang Gao, Dinggang Shen
By introducing an unified optimization goal, DeepAugNet intends to combine the data augmentation and the deep model training in an end-to-end training manner which is realized by simultaneously training a hybrid architecture of dueling deep Q-learning algorithm and a surrogate deep model.
no code implementations • 17 Aug 2019 • Feihong Liu, Jun Feng, Pew-Thian Yap, Dinggang Shen
Next, a leaf cluster is used to generate one of the multiple kernels, and two corresponding predecessor clusters are used to fine-tune the adopted kernel.
no code implementations • 30 Jul 2019 • Dongming Wei, Sahar Ahmad, Jiayu Huo, Wen Peng, Yunhao Ge, Zhong Xue, Pew-Thian Yap, Wentao Li, Dinggang Shen, Qian Wang
Then, an unsupervised registration network is used to efficiently align the pre-procedural CT (pCT) with the inpainted iCT (inpCT) image.
no code implementations • 7 Jul 2019 • Dong Nie, Lei Xiang, Qian Wang, Dinggang Shen
To address this issue, we propose a simple but effective strategy, that is, we propose a dual-discriminator (dual-D) adversarial learning system, in which, a global-D is used to make an overall evaluation for the synthetic image, and a local-D is proposed to densely evaluate the local regions of the synthetic image.
no code implementations • 25 Jun 2019 • Xuhua Ren, Lichi Zhang, Qian Wang, Dinggang Shen
Medical image segmentation is challenging especially in dealing with small dataset of 3D MR images.
1 code implementation • 17 Jun 2019 • Zhen Zhou, Xiaobo Chen, Yu Zhang, Lishan Qiao, Renping Yu, Gang Pan, Han Zhang, Dinggang Shen
The goal of this work is to introduce a toolbox namely "Brain Network Construction and Classification" (BrainNetClass) to the field to promote more advanced brain network construction methods.
no code implementations • 10 Jun 2019 • Dong Nie, Dinggang Shen
Then we propose a semantic-guided encoder feature learning strategy to learn both high resolution and rich semantic encoder features so that we can more accurately locate the blurry boundaries, which can also enhance the network by selectively learning discriminative features.
no code implementations • 7 Jun 2019 • Feihong Liu, Jun Feng, Geng Chen, Ye Wu, Yoonmi Hong, Pew-Thian Yap, Dinggang Shen
GCNNs are capable of extracting the geometric features of each fiber tract and harnessing the resulting features for accurate fiber parcellation and ultimately avoiding the use of atlases and any registration method.
no code implementations • 21 May 2019 • Xuhua Ren, Lichi Zhang, Sahar Ahmad, Dong Nie, Fan Yang, Lei Xiang, Qian Wang, Dinggang Shen
In this paper, we propose to decompose the single segmentation task into three subsequent sub-tasks, including (1) pixel-wise image segmentation, (2) prediction of the class labels of the objects within the image, and (3) classification of the scene the image belonging to.
no code implementations • 11 Apr 2019 • Qian Zhang, Li Wang, Xiaopeng Zong, Weili Lin, Gang Li, Dinggang Shen
Skull stripping for brain MR images is a basic segmentation task.
no code implementations • 7 Apr 2019 • Siyuan Liu, Kim-Han Thung, Weili Lin, Pew-Thian Yap, Dinggang Shen
In this paper, we introduce an image quality assessment (IQA) method for pediatric T1- and T2-weighted MR images.
no code implementations • 1 Apr 2019 • Fenqiang Zhao, Shunren Xia, Zhengwang Wu, Dingna Duan, Li Wang, Weili Lin, John H Gilmore, Dinggang Shen, Gang Li
In this paper, by leveraging the regular and consistent geometric structure of the resampled cortical surface mapped onto the spherical space, we propose a novel convolution filter analogous to the standard convolution on the image grid.
no code implementations • 6 Feb 2019 • Dongming Wei, Zhengwang Wu, Gang Li, Xiaohuan Cao, Dinggang Shen, Qian Wang
Thus, the two trajectories can act as a bridge to link the fixed and the moving images, and guide their registration.
no code implementations • 5 Jan 2019 • Qingbo Yin, Ehsan Adeli, Liran Shen, Dinggang Shen
Various applications in different fields, such as gene expression analysis or computer vision, suffer from data sets with high-dimensional low-sample-size (HDLSS), which has posed significant challenges for standard statistical and modern machine learning methods.
3 code implementations • 10 Dec 2018 • Zhengyang Wang, Na Zou, Dinggang Shen, Shuiwang Ji
In this work, we propose the non-local U-Nets, which are equipped with flexible global aggregation blocks, for biomedical image segmentation.
1 code implementation • 5 Nov 2018 • Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer, Markus Rempfler, Alessandro Crimi, Russell Takeshi Shinohara, Christoph Berger, Sung Min Ha, Martin Rozycki, Marcel Prastawa, Esther Alberts, Jana Lipkova, John Freymann, Justin Kirby, Michel Bilello, Hassan Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Benedikt Wiestler, Rivka Colen, Aikaterini Kotrotsou, Pamela Lamontagne, Daniel Marcus, Mikhail Milchenko, Arash Nazeri, Marc-Andre Weber, Abhishek Mahajan, Ujjwal Baid, Elizabeth Gerstner, Dongjin Kwon, Gagan Acharya, Manu Agarwal, Mahbubul Alam, Alberto Albiol, Antonio Albiol, Francisco J. Albiol, Varghese Alex, Nigel Allinson, Pedro H. A. Amorim, Abhijit Amrutkar, Ganesh Anand, Simon Andermatt, Tal Arbel, Pablo Arbelaez, Aaron Avery, Muneeza Azmat, Pranjal B., W Bai, Subhashis Banerjee, Bill Barth, Thomas Batchelder, Kayhan Batmanghelich, Enzo Battistella, Andrew Beers, Mikhail Belyaev, Martin Bendszus, Eze Benson, Jose Bernal, Halandur Nagaraja Bharath, George Biros, Sotirios Bisdas, James Brown, Mariano Cabezas, Shilei Cao, Jorge M. Cardoso, Eric N Carver, Adrià Casamitjana, Laura Silvana Castillo, Marcel Catà, Philippe Cattin, Albert Cerigues, Vinicius S. Chagas, Siddhartha Chandra, Yi-Ju Chang, Shiyu Chang, Ken Chang, Joseph Chazalon, Shengcong Chen, Wei Chen, Jefferson W. Chen, Zhaolin Chen, Kun Cheng, Ahana Roy Choudhury, Roger Chylla, Albert Clérigues, Steven Colleman, Ramiro German Rodriguez Colmeiro, Marc Combalia, Anthony Costa, Xiaomeng Cui, Zhenzhen Dai, Lutao Dai, Laura Alexandra Daza, Eric Deutsch, Changxing Ding, Chao Dong, Shidu Dong, Wojciech Dudzik, Zach Eaton-Rosen, Gary Egan, Guilherme Escudero, Théo Estienne, Richard Everson, Jonathan Fabrizio, Yong Fan, Longwei Fang, Xue Feng, Enzo Ferrante, Lucas Fidon, Martin Fischer, Andrew P. French, Naomi Fridman, Huan Fu, David Fuentes, Yaozong Gao, Evan Gates, David Gering, Amir Gholami, Willi Gierke, Ben Glocker, Mingming Gong, Sandra González-Villá, T. Grosges, Yuanfang Guan, Sheng Guo, Sudeep Gupta, Woo-Sup Han, Il Song Han, Konstantin Harmuth, Huiguang He, Aura Hernández-Sabaté, Evelyn Herrmann, Naveen Himthani, Winston Hsu, Cheyu Hsu, Xiaojun Hu, Xiaobin Hu, Yan Hu, Yifan Hu, Rui Hua, Teng-Yi Huang, Weilin Huang, Sabine Van Huffel, Quan Huo, Vivek HV, Khan M. Iftekharuddin, Fabian Isensee, Mobarakol Islam, Aaron S. Jackson, Sachin R. Jambawalikar, Andrew Jesson, Weijian Jian, Peter Jin, V Jeya Maria Jose, Alain Jungo, B Kainz, Konstantinos Kamnitsas, Po-Yu Kao, Ayush Karnawat, Thomas Kellermeier, Adel Kermi, Kurt Keutzer, Mohamed Tarek Khadir, Mahendra Khened, Philipp Kickingereder, Geena Kim, Nik King, Haley Knapp, Urspeter Knecht, Lisa Kohli, Deren Kong, Xiangmao Kong, Simon Koppers, Avinash Kori, Ganapathy Krishnamurthi, Egor Krivov, Piyush Kumar, Kaisar Kushibar, Dmitrii Lachinov, Tryphon Lambrou, Joon Lee, Chengen Lee, Yuehchou Lee, M Lee, Szidonia Lefkovits, Laszlo Lefkovits, James Levitt, Tengfei Li, Hongwei Li, Hongyang Li, Xiaochuan Li, Yuexiang Li, Heng Li, Zhenye Li, Xiaoyu Li, Zeju Li, Xiaogang Li, Wenqi Li, Zheng-Shen Lin, Fengming Lin, Pietro Lio, Chang Liu, Boqiang Liu, Xiang Liu, Mingyuan Liu, Ju Liu, Luyan Liu, Xavier Llado, Marc Moreno Lopez, Pablo Ribalta Lorenzo, Zhentai Lu, Lin Luo, Zhigang Luo, Jun Ma, Kai Ma, Thomas Mackie, Anant Madabushi, Issam Mahmoudi, Klaus H. Maier-Hein, Pradipta Maji, CP Mammen, Andreas Mang, B. S. Manjunath, Michal Marcinkiewicz, S McDonagh, Stephen McKenna, Richard McKinley, Miriam Mehl, Sachin Mehta, Raghav Mehta, Raphael Meier, Christoph Meinel, Dorit Merhof, Craig Meyer, Robert Miller, Sushmita Mitra, Aliasgar Moiyadi, David Molina-Garcia, Miguel A. B. Monteiro, Grzegorz Mrukwa, Andriy Myronenko, Jakub Nalepa, Thuyen Ngo, Dong Nie, Holly Ning, Chen Niu, Nicholas K Nuechterlein, Eric Oermann, Arlindo Oliveira, Diego D. C. Oliveira, Arnau Oliver, Alexander F. I. Osman, Yu-Nian Ou, Sebastien Ourselin, Nikos Paragios, Moo Sung Park, Brad Paschke, J. Gregory Pauloski, Kamlesh Pawar, Nick Pawlowski, Linmin Pei, Suting Peng, Silvio M. Pereira, Julian Perez-Beteta, Victor M. Perez-Garcia, Simon Pezold, Bao Pham, Ashish Phophalia, Gemma Piella, G. N. Pillai, Marie Piraud, Maxim Pisov, Anmol Popli, Michael P. Pound, Reza Pourreza, Prateek Prasanna, Vesna Prkovska, Tony P. Pridmore, Santi Puch, Élodie Puybareau, Buyue Qian, Xu Qiao, Martin Rajchl, Swapnil Rane, Michael Rebsamen, Hongliang Ren, Xuhua Ren, Karthik Revanuru, Mina Rezaei, Oliver Rippel, Luis Carlos Rivera, Charlotte Robert, Bruce Rosen, Daniel Rueckert, Mohammed Safwan, Mostafa Salem, Joaquim Salvi, Irina Sanchez, Irina Sánchez, Heitor M. Santos, Emmett Sartor, Dawid Schellingerhout, Klaudius Scheufele, Matthew R. Scott, Artur A. Scussel, Sara Sedlar, Juan Pablo Serrano-Rubio, N. Jon Shah, Nameetha Shah, Mazhar Shaikh, B. Uma Shankar, Zeina Shboul, Haipeng Shen, Dinggang Shen, Linlin Shen, Haocheng Shen, Varun Shenoy, Feng Shi, Hyung Eun Shin, Hai Shu, Diana Sima, M Sinclair, Orjan Smedby, James M. Snyder, Mohammadreza Soltaninejad, Guidong Song, Mehul Soni, Jean Stawiaski, Shashank Subramanian, Li Sun, Roger Sun, Jiawei Sun, Kay Sun, Yu Sun, Guoxia Sun, Shuang Sun, Yannick R Suter, Laszlo Szilagyi, Sanjay Talbar, DaCheng Tao, Zhongzhao Teng, Siddhesh Thakur, Meenakshi H Thakur, Sameer Tharakan, Pallavi Tiwari, Guillaume Tochon, Tuan Tran, Yuhsiang M. Tsai, Kuan-Lun Tseng, Tran Anh Tuan, Vadim Turlapov, Nicholas Tustison, Maria Vakalopoulou, Sergi Valverde, Rami Vanguri, Evgeny Vasiliev, Jonathan Ventura, Luis Vera, Tom Vercauteren, C. A. Verrastro, Lasitha Vidyaratne, Veronica Vilaplana, Ajeet Vivekanandan, Qian Wang, Chiatse J. Wang, Wei-Chung Wang, Duo Wang, Ruixuan Wang, Yuanyuan Wang, Chunliang Wang, Guotai Wang, Ning Wen, Xin Wen, Leon Weninger, Wolfgang Wick, Shaocheng Wu, Qiang Wu, Yihong Wu, Yong Xia, Yanwu Xu, Xiaowen Xu, Peiyuan Xu, Tsai-Ling Yang, Xiaoping Yang, Hao-Yu Yang, Junlin Yang, Haojin Yang, Guang Yang, Hongdou Yao, Xujiong Ye, Changchang Yin, Brett Young-Moxon, Jinhua Yu, Xiangyu Yue, Songtao Zhang, Angela Zhang, Kun Zhang, Xue-jie Zhang, Lichi Zhang, Xiaoyue Zhang, Yazhuo Zhang, Lei Zhang, Jian-Guo Zhang, Xiang Zhang, Tianhao Zhang, Sicheng Zhao, Yu Zhao, Xiaomei Zhao, Liang Zhao, Yefeng Zheng, Liming Zhong, Chenhong Zhou, Xiaobing Zhou, Fan Zhou, Hongtu Zhu, Jin Zhu, Ying Zhuge, Weiwei Zong, Jayashree Kalpathy-Cramer, Keyvan Farahani, Christos Davatzikos, Koen van Leemput, Bjoern Menze
This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i. e., 2012-2018.
1 code implementation • ECCV 2018 • Xin Li, Fan Yang, Hong Cheng, Wei Liu, Dinggang Shen
Our goal is to overcome this limitation by automatically converting an existing deep contour detection model into a salient object detection model without using any manual salient object masks.
no code implementations • 30 Aug 2018 • Weizheng Yan, Han Zhang, Jing Sui, Dinggang Shen
Dynamic functional connectivity (dFC), consisting of time-varying spatiotemporal dynamics, may characterize "chronnectome" diagnostic information for improving MCI classification.
no code implementations • 28 Apr 2018 • Xiaohuan Cao, Jianhua Yang, Li Wang, Zhong Xue, Qian Wang, Dinggang Shen
In this paper, we propose to train a non-rigid inter-modality image registration network, which can directly predict the transformation field from the input multimodal images, such as CT and MR images.
1 code implementation • 27 Apr 2018 • Jinquan Sun, Yinghuan Shi, Yang Gao, Lei Wang, Luping Zhou, Wanqi Yang, Dinggang Shen
In this paper, we present a novel method for interactive medical image segmentation with the following merits.
no code implementations • 13 Feb 2018 • Jingfan Fan, Xiaohuan Cao, Pew-Thian Yap, Dinggang Shen
In this paper, we propose a deep learning approach for image registration by predicting deformation from image appearance.
1 code implementation • 14 Dec 2017 • Jose Dolz, Christian Desrosiers, Li Wang, Jing Yuan, Dinggang Shen, Ismail Ben Ayed
We report evaluations of our method on the public data of the MICCAI iSEG-2017 Challenge on 6-month infant brain MRI segmentation, and show very competitive results among 21 teams, ranking first or second in most metrics.
Ranked #1 on
Infant Brain Mri Segmentation
on iSEG 2017 Challenge
no code implementations • NeurIPS 2017 • Xiaoqian Wang, Hong Chen, Weidong Cai, Dinggang Shen, Heng Huang
Linear regression models have been successfully used to function estimation and model selection in high-dimensional data analysis.
no code implementations • 7 Sep 2017 • Lei Xiang, Qian Wang, Xiyao Jin, Dong Nie, Yu Qiao, Dinggang Shen
After repeat-ing this embedding procedure for several times in the network, we can eventually synthesize a final CT image in the end of the DECNN.
no code implementations • 16 Dec 2016 • Dong Nie, Roger Trullo, Caroline Petitjean, Su Ruan, Dinggang Shen
To better model the nonlinear relationship from MRI to CT and to produce more realistic images, we propose to use the adversarial training strategy and an image gradient difference loss function.
no code implementations • NeurIPS 2015 • Ehsan Adeli-Mosabbeb, Kim-Han Thung, Le An, Feng Shi, Dinggang Shen
The proposed method operates under a semi-supervised setting, in which both labeled training and unlabeled testing data are incorporated to form the intrinsic geometry of the sample space.
no code implementations • 23 Jun 2015 • Luping Zhou, Lei Wang, Lingqiao Liu, Philip Ogunbona, Dinggang Shen
This brings two general discriminative learning frameworks for Gaussian Bayesian networks (GBN).
no code implementations • CVPR 2014 • Yinghuan Shi, Heung-Il Suk, Yang Gao, Dinggang Shen
Therefore, it is natural to hypothesize that the low-level features extracted from neuroimaging data are related to each other in some ways.
no code implementations • CVPR 2014 • Xiaofeng Zhu, Heung-Il Suk, Dinggang Shen
We conducted experiments on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, and showed that the newly devised loss function was effective to enhance the performances of both clinical score prediction and disease status identification, outperforming the state-of-the-art methods.
no code implementations • CVPR 2014 • Gerard Sanroma, Guorong Wu, Yaozong Gao, Dinggang Shen
In this way, we can select the best atlases according to their expected labeling accuracy.
no code implementations • 2 Jul 2013 • Jian Cheng, Tianzi Jiang, Rachid Deriche, Dinggang Shen, Pew-Thian Yap
Compared with the start-of-the-art CR-DL and DR-DL methods proposed by Merlet et al. and Bilgic et al., espectively, our work offers the following advantages.
no code implementations • CVPR 2013 • Yinghuan Shi, Shu Liao, Yaozong Gao, Daoqiang Zhang, Yang Gao, Dinggang Shen
Specifically, to segment the prostate in the current treatment image, the physician first takes a few seconds to manually specify the first and last slices of the prostate in the image space.
no code implementations • CVPR 2013 • Shihui Ying, Guorong Wu, Qian Wang, Dinggang Shen
Specifically, we first use a graph to model the distribution of all image data sitting on the image manifold, with each node representing an image and each edge representing the geodesic pathway between two nodes (or images).
no code implementations • CVPR 2013 • Luping Zhou, Lei Wang, Lingqiao Liu, Philip Ogunbona, Dinggang Shen
Analyzing brain networks from neuroimages is becoming a promising approach in identifying novel connectivitybased biomarkers for the Alzheimer's disease (AD).