Search Results for author:
Found 88 papers, 21 papers with code
NeuroExplainer: Fine-Grained Attention Decoding to Uncover Cortical Development Patterns of Preterm Infants
Deploying reliable deep learning techniques in interdisciplinary applications needs learned models to output accurate and ({even more importantly}) explainable predictions.
SLMT-Net: A Self-supervised Learning based Multi-scale Transformer Network for Cross-Modality MR Image Synthesis
During the fine-tuning stage, we present a Multi-scale Transformer U-Net (MT-UNet) to synthesize the target-modality images, in which a Dual-scale Selective Fusion (DSF) module is proposed to fully integrate multi-scale features extracted from the encoder of the pre-trained Edge-MAE.
SNAF: Sparse-view CBCT Reconstruction with Neural Attenuation Fields
Cone beam computed tomography (CBCT) has been widely used in clinical practice, especially in dental clinics, while the radiation dose of X-rays when capturing has been a long concern in CBCT imaging.
JoJoNet: Joint-contrast and Joint-sampling-and-reconstruction Network for Multi-contrast MRI
The proposed framework consists of a sampling mask generator for each image contrast and a reconstructor exploiting the inter-contrast correlations with a recurrent structure which enables the information sharing in a holistic way.
Forecasting Human Trajectory from Scene History
We categorize scene history information into two types: historical group trajectory and individual-surroundings interaction.
Hierarchical Graph Convolutional Network Built by Multiscale Atlases for Brain Disorder Diagnosis Using Functional Connectivity
In this study, we propose a novel framework to perform multiscale FCN analysis for brain disorder diagnosis.
Image Synthesis with Disentangled Attributes for Chest X-Ray Nodule Augmentation and Detection
Moreover, we propose to synthesize nodule CXR images by controlling the disentangled nodule attributes for data augmentation, in order to better compensate for the nodules that are easily missed in the detection task.
A Novel Unified Conditional Score-based Generative Framework for Multi-modal Medical Image Completion
Multi-modal medical image completion has been extensively applied to alleviate the missing modality issue in a wealth of multi-modal diagnostic tasks.
RandStainNA: Learning Stain-Agnostic Features from Histology Slides by Bridging Stain Augmentation and Normalization
To address the problems, we unify SN and SA with a novel RandStainNA scheme, which constrains variable stain styles in a practicable range to train a stain agnostic deep learning model.
Rectify ViT Shortcut Learning by Visual Saliency
In this work, we propose a novel and effective saliency-guided vision transformer (SGT) model to rectify shortcut learning in ViT with the absence of eye-gaze data.
Learning towards Synchronous Network Memorizability and Generalizability for Continual Segmentation across Multiple Sites
In clinical practice, a segmentation network is often required to continually learn on a sequential data stream from multiple sites rather than a consolidated set, due to the storage cost and privacy restriction.
Eye-gaze-guided Vision Transformer for Rectifying Shortcut Learning
To address this problem, we propose to infuse human experts' intelligence and domain knowledge into the training of deep neural networks.
Semi-Cycled Generative Adversarial Networks for Real-World Face Super-Resolution
To better exploit the powerful generative capability of GAN for real-world face SR, in this paper, we establish two independent degradation branches in the forward and backward cycle-consistent reconstruction processes, respectively, while the two processes share the same restoration branch.
Two-Stream Graph Convolutional Network for Intra-oral Scanner Image Segmentation
The state-of-the-art deep learning-based methods often simply concatenate the raw geometric attributes (i. e., coordinates and normal vectors) of mesh cells to train a single-stream network for automatic intra-oral scanner image segmentation.
Follow My Eye: Using Gaze to Supervise Computer-Aided Diagnosis
In this paper, we demonstrate that the eye movement of radiologists reading medical images can be a new form of supervision to train the DNN-based computer-aided diagnosis (CAD) system.
A Long Short-term Memory Based Recurrent Neural Network for Interventional MRI Reconstruction
Here we proposed a convolutional long short-term memory (Conv-LSTM) based recurrent neural network (RNN), or ConvLR, to reconstruct interventional images with golden-angle radial sampling.
Transformers in Medical Image Analysis: A Review
Transformers have dominated the field of natural language processing, and recently impacted the computer vision area.
Knee Cartilage Defect Assessment by Graph Representation and Surface Convolution
Knee osteoarthritis (OA) is the most common osteoarthritis and a leading cause of disability.
Domain Generalization for Mammography Detection via Multi-style and Multi-view Contrastive Learning
Specifically, the backbone network is firstly trained with a multi-style and multi-view unsupervised self-learning scheme for the embedding of invariant features to various vendor-styles.
Fast T2w/FLAIR MRI Acquisition by Optimal Sampling of Information Complementary to Pre-acquired T1w MRI
Recent studies on T1-assisted MRI reconstruction for under-sampled images of other modalities have demonstrated the potential of further accelerating MRI acquisition of other modalities.
Learning MRI Artifact Removal With Unpaired Data
Retrospective artifact correction (RAC) improves image quality post acquisition and enhances image usability.
A Few-shot Learning Graph Multi-Trajectory Evolution Network for Forecasting Multimodal Baby Connectivity Development from a Baseline Timepoint
To the best of our knowledge, this is the first teacher-student architecture tailored for brain graph multi-trajectory growth prediction that is based on few-shot learning and generalized to graph neural networks (GNNs).
Two-Stage Mesh Deep Learning for Automated Tooth Segmentation and Landmark Localization on 3D Intraoral Scans
Our TS-MDL first adopts an end-to-end \emph{i}MeshSegNet method (i. e., a variant of the existing MeshSegNet with both improved accuracy and efficiency) to label each tooth on the downsampled scan.
A Self-Supervised Deep Framework for Reference Bony Shape Estimation in Orthognathic Surgical Planning
In the training stage, the simulator maps jaw deformities of a patient bone to a normal bone to generate a simulated deformed bone.
Cross-Site Severity Assessment of COVID-19 from CT Images via Domain Adaptation
Particularly, we propose a domain translator and align the heterogeneous data to the estimated class prototypes (i. e., class centers) in a hyper-sphere manifold.
Multi-Modal MRI Reconstruction Assisted with Spatial Alignment Network
However, we find that the performance of the aforementioned multi-modal reconstruction can be negatively affected by subtle spatial misalignment between different modalities, which is actually common in clinical practice.
A Multi-scale Graph Network with Multi-head Attention for Histopathology Image Diagnosis
The proposed method is featured by a pyramid graph structure and an attention-based multi-instance learning strategy.
SMILE: Sparse-Attention based Multiple Instance Contrastive Learning for Glioma Sub-type Classification Using Pathological Image
In this paper, we propose a Sparse-attention based Multiple Instance contrastive LEarning (SMILE) method for glioma sub-type classification.
Two-Stage Self-Supervised Cycle-Consistency Network for Reconstruction of Thin-Slice MR Images
To this end, we propose a novel Two-stage Self-supervised Cycle-consistency Network (TSCNet) for MR slice interpolation, in which a two-stage self-supervised learning (SSL) strategy is developed for unsupervised DL network training.
TSGCNet: Discriminative Geometric Feature Learning With Two-Stream Graph Convolutional Network for 3D Dental Model Segmentation
State-of-the-art methods directly concatenate the raw attributes of 3D inputs, namely coordinates and normal vectors of mesh cells, to train a single-stream network for fully-automated tooth segmentation.
Cross-Modality Brain Tumor Segmentation via Bidirectional Global-to-Local Unsupervised Domain Adaptation
Specifically, a bidirectional image synthesis and segmentation module is proposed to segment the brain tumor using the intermediate data distributions generated for the two domains, which includes an image-to-image translator and a shared-weighted segmentation network.
A novel multiple instance learning framework for COVID-19 severity assessment via data augmentation and self-supervised learning
How to fast and accurately assess the severity level of COVID-19 is an essential problem, when millions of people are suffering from the pandemic around the world.
TSGCNet: Discriminative Geometric Feature Learning with Two-Stream GraphConvolutional Network for 3D Dental Model Segmentation
State-of-the-art methods directly concatenate the raw attributes of 3D inputs, namely coordinates and normal vectors of mesh cells, to train a single-stream network for fully-automated tooth segmentation.
Co-evolution of Functional Brain Network at Multiple Scales during Early Infancy
By applying our proposed methodological framework on the collected longitudinal infant dataset, we provided the first evidence that, in the first 2 years of life, the brain functional network is co-evolved at different scales, where each scale displays the unique reconfiguration pattern in terms of modular organization.
Deep Modeling of Growth Trajectories for Longitudinal Prediction of Missing Infant Cortical Surfaces
Charting cortical growth trajectories is of paramount importance for understanding brain development.
Learning-based Computer-aided Prescription Model for Parkinson's Disease: A Data-driven Perspective
Then, we build a novel computer-aided prescription model by learning the relation between observed symptoms and prescription drug.
Multi-Site Infant Brain Segmentation Algorithms: The iSeg-2019 Challenge
Deep learning-based methods have achieved state-of-the-art performance; however, one of major limitations is that the learning-based methods may suffer from the multi-site issue, that is, the models trained on a dataset from one site may not be applicable to the datasets acquired from other sites with different imaging protocols/scanners.
HF-UNet: Learning Hierarchically Inter-Task Relevance in Multi-Task U-Net for Accurate Prostate Segmentation
In this paper, we tackle the challenging task of prostate segmentation in CT images by a two-stage network with 1) the first stage to fast localize, and 2) the second stage to accurately segment the prostate.
An Auto-Context Deformable Registration Network for Infant Brain MRI
Deformable image registration is fundamental to longitudinal and population analysis.
A Self-ensembling Framework for Semi-supervised Knee Cartilage Defects Assessment with Dual-Consistency
With dual-consistency checking of the attention in the lesion classification and localization, the two networks can gradually optimize the attention distribution and improve the performance of each other, whereas the training relies on partially labeled data only and follows the semi-supervised manner.
MetricUNet: Synergistic Image- and Voxel-Level Learning for Precise CT Prostate Segmentation via Online Sampling
Therefore, the proposed network has a dual-branch architecture that tackles two tasks: 1) a segmentation sub-network aiming to generate the prostate segmentation, and 2) a voxel-metric learning sub-network aiming to improve the quality of the learned feature space supervised by a metric loss.
Synergistic Learning of Lung Lobe Segmentation and Hierarchical Multi-Instance Classification for Automated Severity Assessment of COVID-19 in CT Images
Considering that only a few infection regions in a CT image are related to the severity assessment, we first represent each input image by a bag that contains a set of 2D image patches (with each cropped from a specific slice).
Hypergraph Learning for Identification of COVID-19 with CT Imaging
The main challenge in early screening is how to model the confusing cases in the COVID-19 and CAP groups, with very similar clinical manifestations and imaging features.
Adaptive Feature Selection Guided Deep Forest for COVID-19 Classification with Chest CT
We evaluated our proposed AFS-DF on COVID-19 dataset with 1495 patients of COVID-19 and 1027 patients of community acquired pneumonia (CAP).
Joint Prediction and Time Estimation of COVID-19 Developing Severe Symptoms using Chest CT Scan
To our knowledge, this study is the first work to predict the disease progression and the conversion time, which could help clinicians to deal with the potential severe cases in time or even save the patients' lives.
Diagnosis of Coronavirus Disease 2019 (COVID-19) with Structured Latent Multi-View Representation Learning
In this study, we propose to conduct the diagnosis of COVID-19 with a series of features extracted from CT images.
Dual-Sampling Attention Network for Diagnosis of COVID-19 from Community Acquired Pneumonia
To this end, we develop a dual-sampling attention network to automatically diagnose COVID- 19 from the community acquired pneumonia (CAP) in chest computed tomography (CT).
Review of Artificial Intelligence Techniques in Imaging Data Acquisition, Segmentation and Diagnosis for COVID-19
In this review paper, we thus cover the entire pipeline of medical imaging and analysis techniques involved with COVID-19, including image acquisition, segmentation, diagnosis, and follow-up.
Reducing Magnetic Resonance Image Spacing by Learning Without Ground-Truth
In this work, we propose a novel deep-learning-based super-resolution algorithm to generate high-resolution (HR) MR images with small slice spacing from low-resolution (LR) inputs of large slice spacing.
Severity Assessment of Coronavirus Disease 2019 (COVID-19) Using Quantitative Features from Chest CT Images
Purpose: Using machine learning method to realize automatic severity assessment (non-severe or severe) of COVID-19 based on chest CT images, and to explore the severity-related features from the resulting assessment model.
Large-Scale Screening of COVID-19 from Community Acquired Pneumonia using Infection Size-Aware Classification
The worldwide spread of coronavirus disease (COVID-19) has become a threatening risk for global public health.
Lung Infection Quantification of COVID-19 in CT Images with Deep Learning
The performance of the system was evaluated by comparing the automatically segmented infection regions with the manually-delineated ones on 300 chest CT scans of 300 COVID-19 patients.
Multifold Acceleration of Diffusion MRI via Slice-Interleaved Diffusion Encoding (SIDE)
Diffusion MRI (dMRI) is a unique imaging technique for in vivo characterization of tissue microstructure and white matter pathways.
Automatic Data Augmentation via Deep Reinforcement Learning for Effective Kidney Tumor Segmentation
Conventional data augmentation realized by performing simple pre-processing operations (\eg, rotation, crop, \etc) has been validated for its advantage in enhancing the performance for medical image segmentation.
Automatic Data Augmentation by Learning the Deterministic Policy
By introducing an unified optimization goal, DeepAugNet intends to combine the data augmentation and the deep model training in an end-to-end training manner which is realized by simultaneously training a hybrid architecture of dueling deep Q-learning algorithm and a surrogate deep model.
Multi-Kernel Filtering for Nonstationary Noise: An Extension of Bilateral Filtering Using Image Context
Next, a leaf cluster is used to generate one of the multiple kernels, and two corresponding predecessor clusters are used to fine-tune the adopted kernel.
Synthesis and Inpainting-Based MR-CT Registration for Image-Guided Thermal Ablation of Liver Tumors
Then, an unsupervised registration network is used to efficiently align the pre-procedural CT (pCT) with the inpainted iCT (inpCT) image.
Dual Adversarial Learning with Attention Mechanism for Fine-grained Medical Image Synthesis
To address this issue, we propose a simple but effective strategy, that is, we propose a dual-discriminator (dual-D) adversarial learning system, in which, a global-D is used to make an overall evaluation for the synthetic image, and a local-D is proposed to densely evaluate the local regions of the synthetic image.
Brain MR Image Segmentation in Small Dataset with Adversarial Defense and Task Reorganization
Medical image segmentation is challenging especially in dealing with small dataset of 3D MR images.
Brain Network Construction and Classification Toolbox (BrainNetClass)
The goal of this work is to introduce a toolbox namely "Brain Network Construction and Classification" (BrainNetClass) to the field to promote more advanced brain network construction methods.
Semantic-guided Encoder Feature Learning for Blurry Boundary Delineation
Then we propose a semantic-guided encoder feature learning strategy to learn both high resolution and rich semantic encoder features so that we can more accurately locate the blurry boundaries, which can also enhance the network by selectively learning discriminative features.
DeepBundle: Fiber Bundle Parcellation with Graph Convolution Neural Networks
GCNNs are capable of extracting the geometric features of each fiber tract and harnessing the resulting features for accurate fiber parcellation and ultimately avoiding the use of atlases and any registration method.
Task Decomposition and Synchronization for Semantic Biomedical Image Segmentation
In this paper, we propose to decompose the single segmentation task into three subsequent sub-tasks, including (1) pixel-wise image segmentation, (2) prediction of the class labels of the objects within the image, and (3) classification of the scene the image belonging to.
FRNET: Flattened Residual Network for Infant MRI Skull Stripping
Skull stripping for brain MR images is a basic segmentation task.
Real-Time Quality Assessment of Pediatric MRI via Semi-Supervised Deep Nonlocal Residual Neural Networks
In this paper, we introduce an image quality assessment (IQA) method for pediatric T1- and T2-weighted MR images.
Spherical U-Net on Cortical Surfaces: Methods and Applications
In this paper, by leveraging the regular and consistent geometric structure of the resampled cortical surface mapped onto the spherical space, we propose a novel convolution filter analogous to the standard convolution on the image grid.
Deep Morphological Simplification Network (MS-Net) for Guided Registration of Brain Magnetic Resonance Images
Thus, the two trajectories can act as a bridge to link the fixed and the moving images, and guide their registration.
Population-Guided Large Margin Classifier for High-Dimension Low -Sample-Size Problems
Various applications in different fields, such as gene expression analysis or computer vision, suffer from data sets with high-dimensional low-sample-size (HDLSS), which has posed significant challenges for standard statistical and modern machine learning methods.
Non-local U-Net for Biomedical Image Segmentation
In this work, we propose the non-local U-Nets, which are equipped with flexible global aggregation blocks, for biomedical image segmentation.
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i. e., 2012-2018.
Contour Knowledge Transfer for Salient Object Detection
Our goal is to overcome this limitation by automatically converting an existing deep contour detection model into a salient object detection model without using any manual salient object masks.
Deep Chronnectome Learning via Full Bidirectional Long Short-Term Memory Networks for MCI Diagnosis
Dynamic functional connectivity (dFC), consisting of time-varying spatiotemporal dynamics, may characterize "chronnectome" diagnostic information for improving MCI classification.
Deep Learning based Inter-Modality Image Registration Supervised by Intra-Modality Similarity
In this paper, we propose to train a non-rigid inter-modality image registration network, which can directly predict the transformation field from the input multimodal images, such as CT and MR images.
Interactive Medical Image Segmentation via Point-Based Interaction and Sequential Patch Learning
In this paper, we present a novel method for interactive medical image segmentation with the following merits.
BIRNet: Brain Image Registration Using Dual-Supervised Fully Convolutional Networks
In this paper, we propose a deep learning approach for image registration by predicting deformation from image appearance.
Deep CNN ensembles and suggestive annotations for infant brain MRI segmentation
We report evaluations of our method on the public data of the MICCAI iSEG-2017 Challenge on 6-month infant brain MRI segmentation, and show very competitive results among 21 teams, ranking first or second in most metrics.
Ranked #1 on
Infant Brain Mri Segmentation
on iSEG 2017 Challenge
Regularized Modal Regression with Applications in Cognitive Impairment Prediction
Linear regression models have been successfully used to function estimation and model selection in high-dimensional data analysis.
Deep Embedding Convolutional Neural Network for Synthesizing CT Image from T1-Weighted MR Image
After repeat-ing this embedding procedure for several times in the network, we can eventually synthesize a final CT image in the end of the DECNN.
Medical Image Synthesis with Context-Aware Generative Adversarial Networks
To better model the nonlinear relationship from MRI to CT and to produce more realistic images, we propose to use the adversarial training strategy and an image gradient difference loss function.
Robust Feature-Sample Linear Discriminant Analysis for Brain Disorders Diagnosis
The proposed method operates under a semi-supervised setting, in which both labeled training and unlabeled testing data are incorporated to form the intrinsic geometry of the sample space.
Learning Discriminative Bayesian Networks from High-dimensional Continuous Neuroimaging Data
This brings two general discriminative learning frameworks for Gaussian Bayesian networks (GBN).
Joint Coupled-Feature Representation and Coupled Boosting for AD Diagnosis
Therefore, it is natural to hypothesize that the low-level features extracted from neuroimaging data are related to each other in some ways.
Matrix-Similarity Based Loss Function and Feature Selection for Alzheimer's Disease Diagnosis
We conducted experiments on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, and showed that the newly devised loss function was effective to enhance the performances of both clinical score prediction and disease status identification, outperforming the state-of-the-art methods.
Learning-Based Atlas Selection for Multiple-Atlas Segmentation
In this way, we can select the best atlases according to their expected labeling accuracy.
Regularized Spherical Polar Fourier Diffusion MRI with Optimal Dictionary Learning
Compared with the start-of-the-art CR-DL and DR-DL methods proposed by Merlet et al. and Bilgic et al., espectively, our work offers the following advantages.
Prostate Segmentation in CT Images via Spatial-Constrained Transductive Lasso
Specifically, to segment the prostate in the current treatment image, the physician first takes a few seconds to manually specify the first and last slices of the prostate in the image space.
Groupwise Registration via Graph Shrinkage on the Image Manifold
Specifically, we first use a graph to model the distribution of all image data sitting on the image manifold, with each node representing an image and each edge representing the geodesic pathway between two nodes (or images).
Discriminative Brain Effective Connectivity Analysis for Alzheimer's Disease: A Kernel Learning Approach upon Sparse Gaussian Bayesian Network
Analyzing brain networks from neuroimages is becoming a promising approach in identifying novel connectivitybased biomarkers for the Alzheimer's disease (AD).
