Search Results for author: Donghyuk Lee

Found 2 papers, 1 papers with code

GRIM-Filter: Fast Seed Location Filtering in DNA Read Mapping Using Processing-in-Memory Technologies

1 code implementation2 Nov 2017 Jeremie S. Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan, Onur Mutlu

State-of-the-art read mappers 1) quickly generate possible mapping locations for seeds (i. e., smaller segments) within each read, 2) extract reference sequences at each of the mapping locations, and 3) check similarity between each read and its associated reference sequences with a computationally-expensive algorithm (i. e., sequence alignment) to determine the origin of the read.

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