no code implementations • 29 Mar 2024 • Molin Zhang, Polina Golland, Patricia Ellen Grant, Elfar Adalsteinsson
In this study, we introduce FetalDiffusion, a novel approach utilizing a conditional diffusion model to generate 3D synthetic fetal MRI with controllable pose.
1 code implementation • 3 Mar 2023 • Molin Zhang, Junshen Xu, Yamin Arefeen, Elfar Adalsteinsson
We perform experiments on simulated and retrospective in-vivo data to evaluate the performance of the proposed zero-shot learning method for temporal FSE reconstruction.
1 code implementation • 25 Jan 2023 • Nalini M. Singh, Neel Dey, Malte Hoffmann, Bruce Fischl, Elfar Adalsteinsson, Robert Frost, Adrian V. Dalca, Polina Golland
Motion artifacts are a pervasive problem in MRI, leading to misdiagnosis or mischaracterization in population-level imaging studies.
1 code implementation • 27 Aug 2022 • Yamin Arefeen, Junshen Xu, Molin Zhang, Zijing Dong, Fuyixue Wang, Jacob White, Berkin Bilgic, Elfar Adalsteinsson
Purpose: Training auto-encoders on simulated signal evolution and inserting the decoder into the forward model improves reconstructions through more compact, Bloch-equation-based representations of signal in comparison to linear subspaces.
1 code implementation • 22 Jun 2022 • Junshen Xu, Daniel Moyer, P. Ellen Grant, Polina Golland, Juan Eugenio Iglesias, Elfar Adalsteinsson
Experiments with real-world MRI data are also performed to demonstrate the ability of the proposed model to improve the quality of 3D reconstruction under severe fetal motion.
no code implementations • 10 Mar 2022 • Ekaterina Kuzmina, Artem Razumov, Oleg Y. Rogov, Elfar Adalsteinsson, Jacob White, Dmitry V. Dylov
Image corruption by motion artifacts is an ingrained problem in Magnetic Resonance Imaging (MRI).
no code implementations • 8 Oct 2021 • Malte Hoffmann, Esra Abaci Turk, Borjan Gagoski, Leah Morgan, Paul Wighton, M. Dylan Tisdall, Martin Reuter, Elfar Adalsteinsson, P. Ellen Grant, Lawrence L. Wald, André J. W. van der Kouwe
In fetal-brain MRI, head-pose changes between prescription and acquisition present a challenge to obtaining the standard sagittal, coronal and axial views essential to clinical assessment.
1 code implementation • 23 Jun 2021 • Junshen Xu, Esra Abaci Turk, P. Ellen Grant, Polina Golland, Elfar Adalsteinsson
Fetal motion is unpredictable and rapid on the scale of conventional MR scan times.
1 code implementation • 23 Jun 2021 • Junshen Xu, Elfar Adalsteinsson
Further, it only requires a single noisy image with a few auxiliary observations at different time frames for training and inference.
no code implementations • 2 Apr 2021 • Yamin Arefeen, Onur Beker, Jaejin Cho, Heng Yu, Elfar Adalsteinsson, Berkin Bilgic
Conclusion: SPARK synergizes with physics-based acquisition and reconstruction techniques to improve accelerated MRI by training scan-specific models to estimate and correct reconstruction errors in k-space.
no code implementations • 16 Jul 2020 • Molin Zhang, Junshen Xu, Esra Abaci Turk, P. Ellen Grant, Polina Golland, Elfar Adalsteinsson
The proposed DRL for fetal pose landmark search demonstrates a potential clinical utility for online detection of fetal motion that guides real-time mitigation of motion artifacts as well as health diagnosis during MRI of the pregnant mother.
1 code implementation • 2 Jul 2020 • Nalini M. Singh, Juan Eugenio Iglesias, Elfar Adalsteinsson, Adrian V. Dalca, Polina Golland
This is in contrast to most current deep learning approaches for image reconstruction that treat frequency and image space features separately and often operate exclusively in one of the two spaces.
no code implementations • 23 Jun 2020 • Junshen Xu, Sayeri Lala, Borjan Gagoski, Esra Abaci Turk, P. Ellen Grant, Polina Golland, Elfar Adalsteinsson
The proposed method is also implemented and evaluated on an MR scanner, which demonstrates the feasibility of online image quality assessment and image reacquisition during fetal MR scans.
no code implementations • 30 Sep 2019 • Daniel Polak, Itthi Chatnuntawech, Jaeyeon Yoon, Siddharth Srinivasan Iyer, Jong-Ho Lee, Peter Bachert, Elfar Adalsteinsson, Kawin Setsompop, Berkin Bilgic
We propose Nonlinear Dipole Inversion (NDI) for high-quality Quantitative Susceptibility Mapping (QSM) without regularization tuning, while matching the image quality of state-of-the-art reconstruction techniques.
no code implementations • 10 Jul 2019 • Junshen Xu, Molin Zhang, Esra Abaci Turk, Larry Zhang, Ellen Grant, Kui Ying, Polina Golland, Elfar Adalsteinsson
The performance and diagnostic utility of magnetic resonance imaging (MRI) in pregnancy is fundamentally constrained by fetal motion.
no code implementations • 6 Mar 2019 • Ruizhi Liao, Esra A. Turk, Miaomiao Zhang, Jie Luo, Elfar Adalsteinsson, P. Ellen Grant, Polina Golland
To achieve accurate and robust alignment, we make a Markov assumption on the nature of motion and take advantage of the temporal smoothness in the image data.
no code implementations • 12 Aug 2016 • Ruizhi Liao, Esra Turk, Miaomiao Zhang, Jie Luo, Ellen Grant, Elfar Adalsteinsson, Polina Golland
We present a robust method to correct for motion and deformations for in-utero volumetric MRI time series.